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  5. AMTR_s00111p00089410

AMTR_s00111p00089410 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00111.60

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP10 assembly factor


Gene families : OG0003059 (Archaeplastida) Phylogenetic Tree(s): OG0003059_tree ,
OG_05_0005928 (LandPlants) Phylogenetic Tree(s): OG_05_0005928_tree ,
OG_06_0006040 (SeedPlants) Phylogenetic Tree(s): OG_06_0006040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00111p00089410
Cluster HCCA: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
AT3G06530 No alias ARM repeat superfamily protein 0.06 Archaeplastida
Cpa|evm.model.tig00000074.2 No alias Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00022075.101 No alias Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre12.g548000 No alias Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01013976001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
Gb_31968 No alias Uncharacterized protein At3g06530 OS=Arabidopsis... 0.07 Archaeplastida
Gb_31970 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_31974 No alias Uncharacterized protein At3g06530 OS=Arabidopsis... 0.06 Archaeplastida
Gb_31975 No alias SSU processome assembly factor (UTP10) 0.06 Archaeplastida
LOC_Os04g46310.1 No alias SSU processome assembly factor (UTP10) 0.05 Archaeplastida
MA_10133755g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10431774g0010 No alias No annotation 0.04 Archaeplastida
MA_735g0010 No alias Uncharacterized protein At3g06530 OS=Arabidopsis... 0.03 Archaeplastida
Mp1g06160.1 No alias SSU processome assembly factor (UTP10) 0.02 Archaeplastida
Pp3c3_10580V3.1 No alias ARM repeat superfamily protein 0.07 Archaeplastida
Solyc03g093480.3.1 No alias SSU processome assembly factor (UTP10) 0.05 Archaeplastida
Zm00001e016831_P001 No alias SSU processome assembly factor (UTP10) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004832 valine-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006438 valyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR022125 U3snoRNP10 230 356
IPR012954 BP28_C_dom 1859 2033
No external refs found!