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  5. AMTR_s00117p00120670

AMTR_s00117p00120670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00117.50

Description : Vesicle trafficking.endomembrane trafficking.vacuolar sorting.AP-4 vacuole cargo adaptor complex.AP4E large epsilon subunit


Gene families : OG0006903 (Archaeplastida) Phylogenetic Tree(s): OG0006903_tree ,
OG_05_0006841 (LandPlants) Phylogenetic Tree(s): OG_05_0006841_tree ,
OG_06_0009982 (SeedPlants) Phylogenetic Tree(s): OG_06_0009982_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00117p00120670
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AT1G31730 No alias Adaptin family protein 0.04 Archaeplastida
Cre06.g310000 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.02 Archaeplastida
GSVIVT01036887001 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.04 Archaeplastida
LOC_Os01g68750.1 No alias large subunit epsilon of AP-4 vacuole cargo adaptor complex 0.05 Archaeplastida
MA_10436474g0010 No alias large subunit epsilon of AP-4 vacuole cargo adaptor complex 0.03 Archaeplastida
Pp3c12_18560V3.1 No alias Adaptin family protein 0.02 Archaeplastida
Solyc08g075310.4.1 No alias large subunit epsilon of AP-4 vacuole cargo adaptor complex 0.06 Archaeplastida
Zm00001e018853_P002 No alias large subunit epsilon of AP-4 vacuole cargo adaptor complex 0.03 Archaeplastida
Zm00001e028486_P002 No alias large subunit epsilon of AP-4 vacuole cargo adaptor complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005665 RNA polymerase II, core complex IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 30 581
No external refs found!