AMTR_s00119p00099150 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00119.78

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor

Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree ,
OG_06_0001523 (SeedPlants) Phylogenetic Tree(s): OG_06_0001523_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00119p00099150
Cluster	HCCA: Cluster_209

Target	Alias	Description	ECC score	Gene Family Method
AT1G26790	No alias	Dof-type zinc finger DNA-binding family protein	0.05	Archaeplastida
AT1G28310	No alias	Dof-type zinc finger DNA-binding family protein	0.04	Archaeplastida
AT2G34140	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Archaeplastida
AT2G46590	DAG2	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT5G02460	No alias	Dof-type zinc finger DNA-binding family protein	0.04	Archaeplastida
AT5G62430	CDF1	cycling DOF factor 1	0.06	Archaeplastida
AT5G65590	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Archaeplastida
Cre12.g521150	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
GSVIVT01002242001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01005057001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01007758001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01007992001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01016538001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
GSVIVT01019969001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01021086001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01027184001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
GSVIVT01034189001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Gb_31997	No alias	transcription factor (DOF)	0.04	Archaeplastida
LOC_Os01g48290.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os02g47810.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os03g16850.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
LOC_Os03g38870.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
LOC_Os04g58190.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os07g13260.1	No alias	transcription factor (DOF)	0.07	Archaeplastida
LOC_Os07g32510.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os10g26620.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
MA_74014g0010	No alias	transcription factor (DOF)	0.03	Archaeplastida
MA_7537g0010	No alias	transcription factor (DOF)	0.03	Archaeplastida
Pp3c13_2000V3.1	No alias	cycling DOF factor 3	0.02	Archaeplastida
Pp3c13_21190V3.1	No alias	cycling DOF factor 3	0.06	Archaeplastida
Pp3c17_23300V3.1	No alias	cycling DOF factor 3	0.02	Archaeplastida
Pp3c17_7930V3.1	No alias	cycling DOF factor 2	0.03	Archaeplastida
Pp3c3_26370V3.1	No alias	cycling DOF factor 3	0.04	Archaeplastida
Pp3c9_4910V3.1	No alias	cycling DOF factor 2	0.04	Archaeplastida
Solyc02g067230.3.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
Solyc02g076850.2.1	No alias	transcription factor (DOF)	0.08	Archaeplastida
Solyc02g077950.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc02g090310.1.1	No alias	transcription factor (DOF)	0.06	Archaeplastida
Solyc03g082840.3.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc03g115940.4.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
Solyc03g121400.1.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc05g007880.4.1	No alias	Cyclic dof factor 2 OS=Arabidopsis thaliana...	0.08	Archaeplastida
Solyc05g054510.2.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc06g069760.3.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
Solyc06g075370.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc06g150130.1.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e000526_P001	No alias	transcription factor (DOF)	0.06	Archaeplastida
Zm00001e001988_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e003414_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e004476_P002	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e006190_P001	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e007228_P002	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e010454_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e011750_P002	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e027411_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e035892_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0006766	vitamin metabolic process	IEP	Neighborhood
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
BP	GO:0009108	coenzyme biosynthetic process	IEP	Neighborhood
BP	GO:0009110	vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Neighborhood
BP	GO:0042816	vitamin B6 metabolic process	IEP	Neighborhood
BP	GO:0042819	vitamin B6 biosynthetic process	IEP	Neighborhood
BP	GO:0042822	pyridoxal phosphate metabolic process	IEP	Neighborhood
BP	GO:0042823	pyridoxal phosphate biosynthetic process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0046184	aldehyde biosynthetic process	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	117	177

External Links

No external refs found!

AMTR_s00119p00099150 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation