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  5. AMTR_s00122p00011550

AMTR_s00122p00011550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00122.2

Description : Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana


Gene families : OG0004742 (Archaeplastida) Phylogenetic Tree(s): OG0004742_tree ,
OG_05_0004399 (LandPlants) Phylogenetic Tree(s): OG_05_0004399_tree ,
OG_06_0007836 (SeedPlants) Phylogenetic Tree(s): OG_06_0007836_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00122p00011550
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
MpVg00250.1 No alias No annotation 0.03 Archaeplastida
Solyc04g014560.4.1 No alias Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e036528_P001 No alias Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR005037 PRP38 8 164
No external refs found!