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  5. AMTR_s00122p00135250

AMTR_s00122p00135250 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00122.72

Description : RNA biosynthesis.transcriptional activation.GRAS transcription factor


Gene families : OG0001710 (Archaeplastida) Phylogenetic Tree(s): OG0001710_tree ,
OG_05_0001098 (LandPlants) Phylogenetic Tree(s): OG_05_0001098_tree ,
OG_06_0001138 (SeedPlants) Phylogenetic Tree(s): OG_06_0001138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00122p00135250
Cluster HCCA: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00207840 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRAS... 0.07 Archaeplastida
AT2G01570 RGA, RGA1 GRAS family transcription factor family protein 0.04 Archaeplastida
GSVIVT01011710001 No alias RNA biosynthesis.transcriptional activation.GRAS... 0.03 Archaeplastida
LOC_Os05g49930.1 No alias DELLA-type gibberellin signal transducer. transcription... 0.02 Archaeplastida
MA_4523766g0010 No alias transcription factor (GRAS) 0.04 Archaeplastida
Pp3c19_8310V3.1 No alias GRAS family transcription factor family protein 0.03 Archaeplastida
Smo139506 No alias RNA biosynthesis.transcriptional activation.GRAS... 0.03 Archaeplastida
Zm00001e005412_P001 No alias DELLA-type gibberellin signal transducer. transcription... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR005202 TF_GRAS 132 438
IPR021914 TF_DELLA_N 21 88
No external refs found!