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  5. AMTR_s00131p00119200

AMTR_s00131p00119200 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00131.93

Description : RNA biosynthesis.transcriptional activation.TIFY transcription factor


Gene families : OG0000437 (Archaeplastida) Phylogenetic Tree(s): OG0000437_tree ,
OG_05_0000221 (LandPlants) Phylogenetic Tree(s): OG_05_0000221_tree ,
OG_06_0000753 (SeedPlants) Phylogenetic Tree(s): OG_06_0000753_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00131p00119200
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT1G17380 TIFY11A, JAZ5 jasmonate-zim-domain protein 5 0.08 Archaeplastida
AT1G19180 TIFY10A, JAZ1 jasmonate-zim-domain protein 1 0.04 Archaeplastida
AT1G74950 TIFY10B, JAZ2 TIFY domain/Divergent CCT motif family protein 0.04 Archaeplastida
GSVIVT01015042001 No alias RNA biosynthesis.transcriptional activation.TIFY... 0.11 Archaeplastida
GSVIVT01016721001 No alias RNA biosynthesis.transcriptional activation.TIFY... 0.04 Archaeplastida
GSVIVT01023256001 No alias RNA biosynthesis.transcriptional activation.TIFY... 0.02 Archaeplastida
Gb_19069 No alias transcription factor (TIFY) 0.04 Archaeplastida
LOC_Os03g08320.1 No alias transcription factor (TIFY) 0.04 Archaeplastida
LOC_Os03g08330.1 No alias transcription factor (TIFY) 0.07 Archaeplastida
LOC_Os03g27900.1 No alias transcription factor (TIFY) 0.02 Archaeplastida
LOC_Os03g28940.1 No alias component JAZ of jasmonic acid receptor complex.... 0.03 Archaeplastida
LOC_Os07g42370.1 No alias component JAZ of jasmonic acid receptor complex.... 0.06 Archaeplastida
LOC_Os10g25290.1 No alias transcription factor (TIFY) 0.06 Archaeplastida
MA_10229741g0010 No alias transcription factor (TIFY) 0.04 Archaeplastida
MA_10426545g0010 No alias transcription factor (TIFY) 0.03 Archaeplastida
MA_10426545g0020 No alias transcription factor (TIFY) 0.03 Archaeplastida
MA_10436815g0010 No alias transcription factor (TIFY) 0.03 Archaeplastida
MA_131708g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_1854g0020 No alias transcription factor (TIFY) 0.04 Archaeplastida
MA_68496g0010 No alias transcription factor (TIFY) 0.02 Archaeplastida
Mp6g06230.1 No alias transcription factor (TIFY) 0.03 Archaeplastida
Pp3c16_13490V3.1 No alias TIFY domain/Divergent CCT motif family protein 0.04 Archaeplastida
Pp3c25_6300V3.1 No alias jasmonate-zim-domain protein 4 0.03 Archaeplastida
Pp3c25_6330V3.1 No alias jasmonate-zim-domain protein 3 0.03 Archaeplastida
Pp3c5_11730V3.1 No alias TIFY domain/Divergent CCT motif family protein 0.03 Archaeplastida
Solyc03g122190.3.1 No alias transcription factor (TIFY) 0.04 Archaeplastida
Solyc06g068930.2.1 No alias transcription factor (TIFY) 0.02 Archaeplastida
Zm00001e000589_P001 No alias transcription factor (TIFY) 0.05 Archaeplastida
Zm00001e000590_P001 No alias transcription factor (TIFY) 0.06 Archaeplastida
Zm00001e001934_P001 No alias component JAZ of jasmonic acid receptor complex.... 0.04 Archaeplastida
Zm00001e004861_P001 No alias transcription factor (TIFY) 0.08 Archaeplastida
Zm00001e004862_P001 No alias transcription factor (TIFY) 0.07 Archaeplastida
Zm00001e012855_P001 No alias transcription factor (TIFY) 0.02 Archaeplastida
Zm00001e012856_P001 No alias transcription factor (TIFY) 0.09 Archaeplastida
Zm00001e035549_P001 No alias component JAZ of jasmonic acid receptor complex.... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR010399 Tify_dom 109 142
IPR018467 CCT_CS 177 201
No external refs found!