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  5. AMTR_s00135p00091990

AMTR_s00135p00091990 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00135.49

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL3 component


Gene families : OG0002284 (Archaeplastida) Phylogenetic Tree(s): OG0002284_tree ,
OG_05_0002131 (LandPlants) Phylogenetic Tree(s): OG_05_0002131_tree ,
OG_06_0002300 (SeedPlants) Phylogenetic Tree(s): OG_06_0002300_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00135p00091990
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT1G43170 RP1, RPL3A, emb2207, ARP1 ribosomal protein 1 0.2 Archaeplastida
AT1G61580 RPL3B, ARP2 R-protein L3 B 0.03 Archaeplastida
Cpa|evm.model.tig00000025.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 Archaeplastida
Cre10.g417700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
GSVIVT01023241001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
GSVIVT01034555001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 Archaeplastida
Gb_35746 No alias component RPL3 of LSU proteome component 0.08 Archaeplastida
LOC_Os11g06750.1 No alias component RPL3 of LSU proteome component 0.19 Archaeplastida
LOC_Os12g07010.1 No alias component RPL3 of LSU proteome component 0.27 Archaeplastida
MA_10432758g0010 No alias component RPL3 of LSU proteome component 0.19 Archaeplastida
MA_124178g0010 No alias component RPL3 of LSU proteome component 0.16 Archaeplastida
Mp1g18990.1 No alias component RPL3 of LSU proteome component 0.31 Archaeplastida
Pp3c10_25460V3.1 No alias R-protein L3 B 0.1 Archaeplastida
Pp3c5_27000V3.1 No alias R-protein L3 B 0.04 Archaeplastida
Pp3c5_27030V3.1 No alias R-protein L3 B 0.06 Archaeplastida
Smo270706 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
Solyc01g104590.3.1 No alias component RPL3 of LSU proteome component 0.29 Archaeplastida
Zm00001e001224_P002 No alias component RPL3 of LSU proteome component 0.12 Archaeplastida
Zm00001e008122_P001 No alias component RPL3 of LSU proteome component 0.1 Archaeplastida
Zm00001e008127_P001 No alias component RPL3 of LSU proteome component 0.14 Archaeplastida
Zm00001e009061_P001 No alias component RPL3 of LSU proteome component 0.15 Archaeplastida
Zm00001e009065_P002 No alias component RPL3 of LSU proteome component 0.17 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Neighborhood
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005850 eukaryotic translation initiation factor 2 complex IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 34 327
No external refs found!