AMTR_s00135p00117490 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00135.68

Description : Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.fatty acid elongation.fatty acid elongation complex.KCS 3-ketoacyl-CoA synthase

Gene families : OG0000123 (Archaeplastida) Phylogenetic Tree(s): OG0000123_tree ,
OG_05_0000139 (LandPlants) Phylogenetic Tree(s): OG_05_0000139_tree ,
OG_06_0000189 (SeedPlants) Phylogenetic Tree(s): OG_06_0000189_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00135p00117490
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
AT1G01120	KCS1	3-ketoacyl-CoA synthase 1	0.03	Archaeplastida
AT1G68530	G2, POP1, KCS6,...	3-ketoacyl-CoA synthase 6	0.02	Archaeplastida
AT1G71160	KCS7	3-ketoacyl-CoA synthase 7	0.03	Archaeplastida
AT3G52160	KCS15	3-ketoacyl-CoA synthase 15	0.03	Archaeplastida
AT5G43760	KCS20	3-ketoacyl-CoA synthase 20	0.02	Archaeplastida
GSVIVT01018539001	No alias	Lipid metabolism.fatty acid synthesis.fatty acid...	0.02	Archaeplastida
GSVIVT01022919001	No alias	Lipid metabolism.fatty acid synthesis.fatty acid...	0.03	Archaeplastida
GSVIVT01026270001	No alias	Lipid metabolism.fatty acid synthesis.fatty acid...	0.03	Archaeplastida
GSVIVT01034244001	No alias	Lipid metabolism.fatty acid synthesis.fatty acid...	0.03	Archaeplastida
Gb_05331	No alias	3-ketoacyl-CoA synthase (KCS)	0.06	Archaeplastida
Gb_15941	No alias	3-ketoacyl-CoA synthase (KCS)	0.03	Archaeplastida
Gb_27864	No alias	3-ketoacyl-CoA synthase (KCS)	0.02	Archaeplastida
LOC_Os03g08360.1	No alias	3-ketoacyl-CoA synthase (KCS)	0.02	Archaeplastida
LOC_Os03g26530.1	No alias	3-ketoacyl-CoA synthase (KCS)	0.02	Archaeplastida
LOC_Os06g14810.1	No alias	3-ketoacyl-CoA synthase (KCS)	0.03	Archaeplastida
MA_10426663g0020	No alias	3-ketoacyl-CoA synthase (KCS)	0.03	Archaeplastida
MA_10429708g0010	No alias	3-ketoacyl-CoA synthase (KCS)	0.03	Archaeplastida
MA_11217g0010	No alias	3-ketoacyl-CoA synthase (KCS)	0.02	Archaeplastida
MA_339700g0010	No alias	3-ketoacyl-CoA synthase (KCS)	0.03	Archaeplastida
MA_43136g0010	No alias	3-ketoacyl-CoA synthase (KCS)	0.02	Archaeplastida
MA_45157g0010	No alias	3-ketoacyl-CoA synthase (KCS)	0.02	Archaeplastida
Pp3c1_26250V3.1	No alias	3-ketoacyl-CoA synthase 11	0.02	Archaeplastida
Pp3c8_1690V3.1	No alias	3-ketoacyl-CoA synthase 11	0.02	Archaeplastida
Smo79947	No alias	Lipid metabolism.fatty acid synthesis.fatty acid...	0.02	Archaeplastida
Solyc02g063140.4.1	No alias	3-ketoacyl-CoA synthase (KCS)	0.03	Archaeplastida
Solyc02g085870.3.1	No alias	3-ketoacyl-CoA synthase (KCS)	0.03	Archaeplastida
Solyc09g083050.3.1	No alias	3-ketoacyl-CoA synthase (KCS)	0.03	Archaeplastida
Zm00001e000868_P002	No alias	3-ketoacyl-CoA synthase (KCS)	0.03	Archaeplastida
Zm00001e021255_P001	No alias	3-ketoacyl-CoA synthase (KCS)	0.02	Archaeplastida
Zm00001e023474_P001	No alias	3-ketoacyl-CoA synthase (KCS)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0006633	fatty acid biosynthetic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	transferase activity, transferring acyl groups	None	Extended
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004751	ribose-5-phosphate isomerase activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Neighborhood
BP	GO:0009052	pentose-phosphate shunt, non-oxidative branch	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009521	photosystem	IEP	Neighborhood
CC	GO:0009522	photosystem I	IEP	Neighborhood
CC	GO:0009523	photosystem II	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
CC	GO:0009538	photosystem I reaction center	IEP	Neighborhood
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Neighborhood
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015979	photosynthesis	IEP	Neighborhood
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Neighborhood
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Neighborhood
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Neighborhood
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Neighborhood
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Neighborhood
BP	GO:0019693	ribose phosphate metabolic process	IEP	Neighborhood
MF	GO:0019829	cation-transporting ATPase activity	IEP	Neighborhood
CC	GO:0019898	extrinsic component of membrane	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0030145	manganese ion binding	IEP	Neighborhood
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
MF	GO:0042625	ATPase coupled ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Neighborhood
MF	GO:0046422	violaxanthin de-epoxidase activity	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
MF	GO:0051536	iron-sulfur cluster binding	IEP	Neighborhood
MF	GO:0051540	metal cluster binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR013601	FAE1_typ3_polyketide_synth	82	371
IPR013747	ACP_syn_III_C	388	468

External Links

No external refs found!

AMTR_s00135p00117490 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation