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  5. AMTR_s00137p00087340

AMTR_s00137p00087340 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00137.41

Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000724 (Archaeplastida) Phylogenetic Tree(s): OG0000724_tree ,
OG_05_0000483 (LandPlants) Phylogenetic Tree(s): OG_05_0000483_tree ,
OG_06_0000437 (SeedPlants) Phylogenetic Tree(s): OG_06_0000437_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00137p00087340
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AT4G37540 LBD39 LOB domain-containing protein 39 0.03 Archaeplastida
AT5G67420 LBD37, ASL39 LOB domain-containing protein 37 0.03 Archaeplastida
GSVIVT01011896001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01031035001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.06 Archaeplastida
GSVIVT01037853001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
Gb_36943 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
LOC_Os01g03890.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os01g20800.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os01g32770.1 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
MA_19934g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_223267g0010 No alias no hits & (original description: none) 0.12 Archaeplastida
MA_70989g0010 No alias transcription factor (AS2/LOB) 0.09 Archaeplastida
MA_80122g0010 No alias transcription factor (AS2/LOB) 0.07 Archaeplastida
Pp3c5_6300V3.1 No alias LOB domain-containing protein 37 0.02 Archaeplastida
Solyc04g077990.3.1 No alias transcription factor (AS2/LOB) 0.07 Archaeplastida
Zm00001e001981_P001 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
Zm00001e005129_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e027415_P001 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Zm00001e027417_P001 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Zm00001e032150_P001 No alias transcription factor (AS2/LOB) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 2 103
No external refs found!