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  5. AMTR_s00138p00035380

AMTR_s00138p00035380 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00138.14

Description : RNA biosynthesis.transcriptional activation.PHD finger transcription factor


Gene families : OG0000911 (Archaeplastida) Phylogenetic Tree(s): OG0000911_tree ,
OG_05_0000834 (LandPlants) Phylogenetic Tree(s): OG_05_0000834_tree ,
OG_06_0001753 (SeedPlants) Phylogenetic Tree(s): OG_06_0001753_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00138p00035380
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01011588001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
GSVIVT01030666001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
Mp3g06700.1 No alias PHD finger transcription factor 0.03 Archaeplastida
Mp3g17000.1 No alias MMD1/DUET meiotic recombination regulating protein. PHD... 0.04 Archaeplastida
Solyc03g116440.3.1 No alias MMD1/DUET meiotic recombination regulating protein. PHD... 0.02 Archaeplastida
Solyc04g008420.1.1 No alias MMD1/DUET meiotic recombination regulating protein. PHD... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!