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  5. AMTR_s00138p00054750

AMTR_s00138p00054750 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00138.25

Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000133 (Archaeplastida) Phylogenetic Tree(s): OG0000133_tree ,
OG_05_0009485 (LandPlants) Phylogenetic Tree(s): OG_05_0009485_tree ,
OG_06_0007059 (SeedPlants) Phylogenetic Tree(s): OG_06_0007059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00138p00054750
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00246870 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 Archaeplastida
AMTR_s00136p00108810 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
AT2G16730 BGAL13 glycosyl hydrolase family 35 protein 0.1 Archaeplastida
AT3G53065 No alias D-galactoside/L-rhamnose binding SUEL lectin protein 0.03 Archaeplastida
AT3G53070 No alias Putative membrane lipoprotein 0.04 Archaeplastida
AT3G53080 No alias D-galactoside/L-rhamnose binding SUEL lectin protein 0.04 Archaeplastida
AT4G35010 BGAL11 beta-galactosidase 11 0.16 Archaeplastida
AT5G20710 BGAL7 beta-galactosidase 7 0.03 Archaeplastida
GSVIVT01008835001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.04 Archaeplastida
GSVIVT01009791001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.06 Archaeplastida
GSVIVT01018853001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.08 Archaeplastida
GSVIVT01022339001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
GSVIVT01024031001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.09 Archaeplastida
GSVIVT01025170001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
GSVIVT01033736001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.01 Archaeplastida
Gb_12091 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Gb_40554 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Gb_41532 No alias 1,2-beta-galactosidase. beta-galactosidase (BGAL) 0.05 Archaeplastida
LOC_Os01g65460.1 No alias 1,2-beta-galactosidase. beta-galactosidase (BGAL) 0.02 Archaeplastida
LOC_Os02g12730.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
LOC_Os06g37560.1 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
LOC_Os06g42310.1 No alias beta-galactosidase (BGAL) 0.12 Archaeplastida
LOC_Os08g43570.1 No alias beta-galactosidase (BGAL) 0.11 Archaeplastida
LOC_Os09g36810.1 No alias beta-galactosidase (BGAL) 0.11 Archaeplastida
LOC_Os10g19960.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
MA_10427427g0010 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
MA_10429233g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10436863g0010 No alias Beta-galactosidase 3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_11388g0010 No alias Beta-galactosidase 3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_168609g0010 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
MA_329922g0010 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
MA_65469g0020 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
MA_665188g0010 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
MA_87238g0010 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Pp3c9_9350V3.1 No alias beta galactosidase 9 0.02 Archaeplastida
Solyc01g111540.4.1 No alias beta-galactosidase (BGAL) 0.07 Archaeplastida
Solyc02g078950.4.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Solyc02g084720.3.1 No alias beta-galactosidase (BGAL) 0.05 Archaeplastida
Solyc03g019890.3.1 No alias 1,2-beta-galactosidase. beta-galactosidase (BGAL) 0.02 Archaeplastida
Solyc06g062580.3.1 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Solyc07g042220.2.1 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Solyc10g055470.2.1 No alias beta-galactosidase (BGAL) 0.18 Archaeplastida
Solyc11g018490.3.1 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Solyc11g069270.2.1 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Zm00001e000496_P002 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Zm00001e003992_P005 No alias no hits & (original description: none) 0.18 Archaeplastida
Zm00001e010258_P001 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Zm00001e013679_P001 No alias Beta-galactosidase 12 OS=Oryza sativa subsp. japonica... 0.01 Archaeplastida
Zm00001e019757_P001 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Zm00001e020528_P001 No alias beta-galactosidase (BGAL) 0.05 Archaeplastida
Zm00001e024694_P002 No alias beta-galactosidase (BGAL) 0.13 Archaeplastida
Zm00001e024944_P002 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Zm00001e035986_P002 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Zm00001e039014_P001 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0030246 carbohydrate binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006071 glycerol metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008889 glycerophosphodiester phosphodiesterase activity IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015936 coenzyme A metabolic process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019400 alditol metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030570 pectate lyase activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000922 Lectin_gal-bd_dom 765 842
IPR001944 Glycoside_Hdrlase_35 50 356
No external refs found!