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  5. AMTR_s00146p00039020

AMTR_s00146p00039020 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00146.19

Description : Cytoskeleton.cp-actin-dependent plastid movement.PMIR cp-actin stability co-factor


Gene families : OG0002266 (Archaeplastida) Phylogenetic Tree(s): OG0002266_tree ,
OG_05_0001684 (LandPlants) Phylogenetic Tree(s): OG_05_0001684_tree ,
OG_06_0002269 (SeedPlants) Phylogenetic Tree(s): OG_06_0002269_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00146p00039020
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
AT5G26160 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.04 Archaeplastida
MA_7515g0010 No alias actin stability co-factor (PMIR) 0.03 Archaeplastida
Smo111808 No alias Cytoskeleton.cp-actin-dependent plastid movement.PMIR... 0.03 Archaeplastida
Zm00001e019980_P001 No alias actin stability co-factor (PMIR) 0.02 Archaeplastida
Zm00001e028177_P001 No alias actin stability co-factor (PMIR) 0.03 Archaeplastida
Zm00001e031409_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005672 transcription factor TFIIA complex IEP Neighborhood
CC GO:0005795 Golgi stack IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008375 acetylglucosaminyltransferase activity IEP Neighborhood
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031984 organelle subcompartment IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098791 Golgi subcompartment IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR019448 NT-C2 122 269
No external refs found!