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  5. AMTR_s00149p00067630

AMTR_s00149p00067630 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00149.44

Description : Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0004267 (Archaeplastida) Phylogenetic Tree(s): OG0004267_tree ,
OG_05_0002950 (LandPlants) Phylogenetic Tree(s): OG_05_0002950_tree ,
OG_06_0003235 (SeedPlants) Phylogenetic Tree(s): OG_06_0003235_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00149p00067630
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AT4G16390 SVR7 pentatricopeptide (PPR) repeat-containing protein 0.05 Archaeplastida
AT5G46580 No alias pentatricopeptide (PPR) repeat-containing protein 0.07 Archaeplastida
GSVIVT01003493001 No alias Pentatricopeptide repeat-containing protein At4g16390,... 0.06 Archaeplastida
GSVIVT01003496001 No alias Pentatricopeptide repeat-containing protein At4g16390,... 0.04 Archaeplastida
Gb_19282 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.04 Archaeplastida
MA_283144g0010 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.03 Archaeplastida
Pp3c15_12010V3.1 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Archaeplastida
Solyc08g077140.1.1 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.04 Archaeplastida
Solyc11g012670.1.1 No alias Pentatricopeptide repeat-containing protein At4g16390,... 0.04 Archaeplastida
Zm00001e000850_P001 No alias Pentatricopeptide repeat-containing protein ATP4,... 0.04 Archaeplastida
Zm00001e006409_P001 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
MF GO:0004556 alpha-amylase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006541 glutamine metabolic process IEP Neighborhood
BP GO:0006542 glutamine biosynthetic process IEP Neighborhood
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006772 thiamine metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009228 thiamine biosynthetic process IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
MF GO:0016987 sigma factor activity IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034311 diol metabolic process IEP Neighborhood
BP GO:0034312 diol biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
BP GO:0042558 pteridine-containing compound metabolic process IEP Neighborhood
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Neighborhood
BP GO:0042723 thiamine-containing compound metabolic process IEP Neighborhood
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Neighborhood
BP GO:0046165 alcohol biosynthetic process IEP Neighborhood
BP GO:0046173 polyol biosynthetic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 39 67
IPR002885 Pentatricopeptide_repeat 388 408
IPR002885 Pentatricopeptide_repeat 283 327
IPR002885 Pentatricopeptide_repeat 214 261
IPR002885 Pentatricopeptide_repeat 71 114
IPR002885 Pentatricopeptide_repeat 141 187
No external refs found!