AMTR_s00154p00087040 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00154.57

No description available

Gene families : OG0001445 (Archaeplastida) Phylogenetic Tree(s): OG0001445_tree ,
OG_05_0001091 (LandPlants) Phylogenetic Tree(s): OG_05_0001091_tree ,
OG_06_0001027 (SeedPlants) Phylogenetic Tree(s): OG_06_0001027_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00154p00087040
Cluster	HCCA: Cluster_253

Target	Alias	Description	ECC score	Gene Family Method
Cre01.g003450	No alias	No description available	0.03	Archaeplastida
GSVIVT01008114001	No alias	Zinc finger CCCH domain-containing protein 38...	0.03	Archaeplastida
Gb_00875	No alias	C3H zinc finger transcription factor	0.06	Archaeplastida
Gb_19122	No alias	C3H zinc finger transcription factor	0.05	Archaeplastida
Gb_26302	No alias	C3H zinc finger transcription factor	0.04	Archaeplastida
LOC_Os05g41790.1	No alias	C3H zinc finger transcription factor	0.04	Archaeplastida
MA_10435667g0010	No alias	Zinc finger CCCH domain-containing protein 38...	0.03	Archaeplastida
MA_111475g0010	No alias	Zinc finger CCCH domain-containing protein 55 OS=Oryza...	0.04	Archaeplastida
MA_111475g0020	No alias	no hits & (original description: none)	0.08	Archaeplastida
MA_321233g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_8408g0030	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp1g05400.1	No alias	Zinc finger CCCH domain-containing protein 55 OS=Oryza...	0.02	Archaeplastida
Pp3c12_4860V3.1	No alias	histone-lysine N-methyltransferases	0.03	Archaeplastida
Pp3c4_15980V3.1	No alias	Zinc finger C-x8-C-x5-C-x3-H type family protein	0.03	Archaeplastida
Solyc03g006350.3.1	No alias	C3H zinc finger transcription factor	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004402	histone acetyltransferase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
CC	GO:0005665	RNA polymerase II, core complex	IEP	Neighborhood
BP	GO:0006366	transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
MF	GO:0008026	ATP-dependent helicase activity	IEP	Neighborhood
MF	GO:0008080	N-acetyltransferase activity	IEP	Neighborhood
MF	GO:0016407	acetyltransferase activity	IEP	Neighborhood
MF	GO:0016410	N-acyltransferase activity	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
CC	GO:0030880	RNA polymerase complex	IEP	Neighborhood
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Neighborhood
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Neighborhood
MF	GO:0070035	purine NTP-dependent helicase activity	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000061	Surp	341	391

External Links

No external refs found!

AMTR_s00154p00087040 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation