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  5. AMTR_s00173p00012350

AMTR_s00173p00012350 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00173.2

Description : Vesicle trafficking.SNARE target membrane recognition and fusion complexes.Qa-type SNARE components.SYP3-group protein


Gene families : OG0002767 (Archaeplastida) Phylogenetic Tree(s): OG0002767_tree ,
OG_05_0003216 (LandPlants) Phylogenetic Tree(s): OG_05_0003216_tree ,
OG_06_0003222 (SeedPlants) Phylogenetic Tree(s): OG_06_0003222_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00173p00012350
Cluster HCCA: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
MA_57116g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_9185616g0010 No alias SYP3-group Qa-type SNARE component 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 266 323
IPR006011 Syntaxin_N 52 156
No external refs found!