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  5. AMTR_s00184p00044240

AMTR_s00184p00044240 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00184.20

Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000101 (Archaeplastida) Phylogenetic Tree(s): OG0000101_tree ,
OG_05_0045653 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0040235 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00184p00044240
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00076p00127530 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
AT1G06280 LBD2 LOB domain-containing protein 2 0.04 Archaeplastida
AT1G65620 AS2 Lateral organ boundaries (LOB) domain family protein 0.04 Archaeplastida
GSVIVT01006269001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
GSVIVT01032592001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
Gb_20676 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_29853 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
LOC_Os03g41600.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os09g19950.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Mp7g17250.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Solyc12g010810.1.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 5 105
No external refs found!