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  5. AMTR_s00199p00026650

AMTR_s00199p00026650 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00199.10

Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0000798 (Archaeplastida) Phylogenetic Tree(s): OG0000798_tree ,
OG_05_0000584 (LandPlants) Phylogenetic Tree(s): OG_05_0000584_tree ,
OG_06_0001187 (SeedPlants) Phylogenetic Tree(s): OG_06_0001187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00199p00026650
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01004470001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01008925001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
GSVIVT01014576001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
Gb_25842 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os01g57650.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os03g15790.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os04g59380.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os06g46910.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_103943g0010 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
MA_10426153g0010 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_525155g0010 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
MA_5608g0010 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Pp3c23_13220V3.1 No alias zinc finger protein-related 0.02 Archaeplastida
Zm00001e008786_P002 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Zm00001e019606_P002 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009607 response to biotic stimulus IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!