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  5. AMTR_s00427p00012230

AMTR_s00427p00012230 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00427.2

No description available


Gene families : OG0000166 (Archaeplastida) Phylogenetic Tree(s): OG0000166_tree ,
OG_05_0000070 (LandPlants) Phylogenetic Tree(s): OG_05_0000070_tree ,
OG_06_0000023 (SeedPlants) Phylogenetic Tree(s): OG_06_0000023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00427p00012230
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00044490 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00004p00235940 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00013p00218720 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00018p00197830 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00021p00145650 No alias No description available 0.03 Archaeplastida
AMTR_s00053p00120970 No alias No description available 0.04 Archaeplastida
AMTR_s00060p00142680 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00068p00085390 No alias No description available 0.02 Archaeplastida
AMTR_s00137p00114310 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s02919p00003180 No alias No description available 0.04 Archaeplastida
AMTR_s04525p00001750 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s05692p00005270 No alias No description available 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Neighborhood
CC GO:0005849 mRNA cleavage factor complex IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!