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  5. AMTR_s00858p00001360

AMTR_s00858p00001360 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00858.1

No description available


Gene families : OG0001668 (Archaeplastida) Phylogenetic Tree(s): OG0001668_tree ,
OG_05_0001072 (LandPlants) Phylogenetic Tree(s): OG_05_0001072_tree ,
OG_06_0024553 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00858p00001360
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00160960 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00067p00030870 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00068p00158450 evm_27.TU.AmTr_v1... Protodermal factor 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_40194 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os01g10490.1 No alias no hits & (original description: none) 0.08 Archaeplastida
LOC_Os02g13660.1 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os04g43670.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g35970.1 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_111671g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp3g10620.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Mp4g22090.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c11_23110V3.1 No alias No annotation 0.05 Archaeplastida
Smo437656 No alias No description available 0.05 Archaeplastida
Solyc06g083880.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc07g055950.3.1 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Solyc12g011010.2.1 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e014410_P001 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e016528_P003 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e019923_P004 No alias Protodermal factor 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e030674_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e030749_P002 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!