1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s02809p00000680

AMTR_s02809p00000680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold02809.1

Description : 50S ribosomal protein L16, chloroplastic OS=Amborella trichopoda


Gene families : OG0002172 (Archaeplastida) Phylogenetic Tree(s): OG0002172_tree ,
OG_05_0002418 (LandPlants) Phylogenetic Tree(s): OG_05_0002418_tree ,
OG_06_0003781 (SeedPlants) Phylogenetic Tree(s): OG_06_0003781_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s02809p00000680
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
ATCG00790 RPL16 ribosomal protein L16 0.07 Archaeplastida
Cre06.g278224 No alias 60S ribosomal protein L16, mitochondrial OS=Prototheca... 0.02 Archaeplastida
Gb_05912 No alias component mtRPL16 of large ribosomal subunit proteome 0.03 Archaeplastida
LOC_Os05g22724.1 No alias 50S ribosomal protein L16, chloroplastic OS=Oryza nivara... 0.03 Archaeplastida
LOC_Os12g34128.1 No alias component mtRPL16 of large ribosomal subunit proteome 0.04 Archaeplastida
Smo137887 No alias 50S ribosomal protein L16, chloroplastic OS=Huperzia lucidula 0.05 Archaeplastida
Solyc00g500032.1.1 No alias 50S ribosomal protein L16, chloroplastic OS=Atropa... 0.05 Archaeplastida
Solyc00g500077.1.1 No alias 50S ribosomal protein L16, chloroplastic OS=Atropa... 0.05 Archaeplastida
Solyc09g050065.1.1 No alias 50S ribosomal protein L16, chloroplastic OS=Solanum... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
BP GO:0008535 respiratory chain complex IV assembly IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009767 photosynthetic electron transport chain IEP Neighborhood
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0019684 photosynthesis, light reaction IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0042773 ATP synthesis coupled electron transport IEP Neighborhood
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 2 117
No external refs found!