Aliases : RHD6
Description : ROOT HAIR DEFECTIVE6
Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0000040 (LandPlants) Phylogenetic Tree(s): OG_05_0000040_tree ,
OG_06_0000031 (SeedPlants) Phylogenetic Tree(s): OG_06_0000031_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT1G66470 | |
Cluster | HCCA: Cluster_225 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00024p00250370 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.bHLH... | 0.02 | Archaeplastida | |
AMTR_s00066p00183410 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.bHLH... | 0.03 | Archaeplastida | |
AT1G09530 | PIF3, POC1, PAP3 | phytochrome interacting factor 3 | 0.05 | Archaeplastida | |
AT2G14760 | No alias | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.06 | Archaeplastida | |
AT2G43010 | SRL2, PIF4, AtPIF4 | phytochrome interacting factor 4 | 0.04 | Archaeplastida | |
AT2G46970 | PIL1 | phytochrome interacting factor 3-like 1 | 0.08 | Archaeplastida | |
AT3G21330 | No alias | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.07 | Archaeplastida | |
AT3G50330 | HEC2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.06 | Archaeplastida | |
AT4G00120 | GT140, IND1, IND, EDA33 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.05 | Archaeplastida | |
AT4G33880 | RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | 0.07 | Archaeplastida | |
AT4G36930 | SPT | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.01 | Archaeplastida | |
AT5G67060 | HEC1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.08 | Archaeplastida | |
AT5G67110 | ALC | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.04 | Archaeplastida | |
GSVIVT01018164001 | No alias | Transcription factor UNE10 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
GSVIVT01026516001 | No alias | RNA biosynthesis.transcriptional activation.bHLH... | 0.01 | Archaeplastida | |
GSVIVT01030846001 | No alias | RNA biosynthesis.transcriptional activation.bHLH... | 0.03 | Archaeplastida | |
Gb_07156 | No alias | transcription factor (bHLH). PIF red/far-red light... | 0.01 | Archaeplastida | |
Gb_27302 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida | |
Gb_27869 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
LOC_Os01g02110.1 | No alias | transcription factor (bHLH) | 0.05 | Archaeplastida | |
LOC_Os01g51140.1 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
LOC_Os03g10770.1 | No alias | transcription factor (bHLH) | 0.06 | Archaeplastida | |
LOC_Os03g42100.1 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida | |
LOC_Os05g46370.1 | No alias | transcription factor (bHLH) | 0.05 | Archaeplastida | |
LOC_Os06g06900.1 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida | |
LOC_Os07g39940.1 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
LOC_Os08g01700.1 | No alias | transcription factor (bHLH) | 0.04 | Archaeplastida | |
LOC_Os11g41640.1 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida | |
LOC_Os12g39850.1 | No alias | transcription factor (bHLH) | 0.05 | Archaeplastida | |
LOC_Os12g40590.1 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
LOC_Os12g40730.1 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
MA_100071g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
MA_29186g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
MA_29441g0010 | No alias | transcription factor (bHLH) | 0.08 | Archaeplastida | |
MA_306658g0010 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
MA_83500g0010 | No alias | transcription factor (bHLH) | 0.07 | Archaeplastida | |
MA_88831g0010 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
Mp6g21470.1 | No alias | transcription factor (bHLH) | 0.05 | Archaeplastida | |
Pp3c14_16620V3.1 | No alias | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.02 | Archaeplastida | |
Pp3c16_21590V3.1 | No alias | ROOT HAIR DEFECTIVE 6-LIKE 2 | 0.03 | Archaeplastida | |
Pp3c27_8050V3.1 | No alias | ROOT HAIR DEFECTIVE 6-LIKE 2 | 0.05 | Archaeplastida | |
Pp3c3_8460V3.1 | No alias | ROOT HAIR DEFECTIVE 6-LIKE 2 | 0.03 | Archaeplastida | |
Pp3c4_24380V3.1 | No alias | ROOT HAIR DEFECTIVE 6-LIKE 2 | 0.05 | Archaeplastida | |
Smo405220 | No alias | RNA biosynthesis.transcriptional activation.bHLH... | 0.01 | Archaeplastida | |
Smo409967 | No alias | RNA biosynthesis.transcriptional activation.bHLH... | 0.03 | Archaeplastida | |
Solyc01g107140.3.1 | No alias | transcription factor (bHLH) | 0.04 | Archaeplastida | |
Solyc02g091440.2.1 | No alias | transcription factor (bHLH) | 0.06 | Archaeplastida | |
Solyc02g093280.2.1 | No alias | transcription factor (bHLH) | 0.04 | Archaeplastida | |
Solyc04g077960.1.1 | No alias | transcription factor (bHLH) | 0.04 | Archaeplastida | |
Solyc04g078790.3.1 | No alias | transcription factor (bHLH) | 0.01 | Archaeplastida | |
Solyc06g008030.3.1 | No alias | transcription factor (bHLH). PIF red/far-red light... | 0.02 | Archaeplastida | |
Solyc12g088380.1.1 | No alias | transcription factor (bHLH) | 0.04 | Archaeplastida | |
Zm00001e006917_P001 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
Zm00001e015610_P001 | No alias | transcription factor (bHLH) | 0.04 | Archaeplastida | |
Zm00001e021883_P001 | No alias | transcription factor (bHLH) | 0.02 | Archaeplastida | |
Zm00001e025656_P001 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida | |
Zm00001e027758_P002 | No alias | transcription factor (bHLH) | 0.04 | Archaeplastida | |
Zm00001e032280_P001 | No alias | transcription factor (bHLH) | 0.04 | Archaeplastida | |
Zm00001e038765_P001 | No alias | transcription factor (bHLH) | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | ISS | Interproscan |
MF | GO:0003700 | DNA-binding transcription factor activity | ISS | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
CC | GO:0005739 | mitochondrion | IDA | Interproscan |
BP | GO:0048766 | root hair initiation | IMP | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000041 | transition metal ion transport | IEP | Neighborhood |
CC | GO:0000323 | lytic vacuole | IEP | Neighborhood |
MF | GO:0003838 | sterol 24-C-methyltransferase activity | IEP | Neighborhood |
MF | GO:0004311 | farnesyltranstransferase activity | IEP | Neighborhood |
MF | GO:0004372 | glycine hydroxymethyltransferase activity | IEP | Neighborhood |
MF | GO:0004452 | isopentenyl-diphosphate delta-isomerase activity | IEP | Neighborhood |
MF | GO:0004536 | deoxyribonuclease activity | IEP | Neighborhood |
MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Neighborhood |
MF | GO:0004791 | thioredoxin-disulfide reductase activity | IEP | Neighborhood |
CC | GO:0005576 | extracellular region | IEP | Neighborhood |
BP | GO:0006563 | L-serine metabolic process | IEP | Neighborhood |
BP | GO:0006694 | steroid biosynthetic process | IEP | Neighborhood |
BP | GO:0006749 | glutathione metabolic process | IEP | Neighborhood |
BP | GO:0006811 | ion transport | IEP | Neighborhood |
BP | GO:0006812 | cation transport | IEP | Neighborhood |
BP | GO:0006820 | anion transport | IEP | Neighborhood |
BP | GO:0006826 | iron ion transport | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
MF | GO:0008169 | C-methyltransferase activity | IEP | Neighborhood |
BP | GO:0008202 | steroid metabolic process | IEP | Neighborhood |
MF | GO:0008417 | fucosyltransferase activity | IEP | Neighborhood |
MF | GO:0008422 | beta-glucosidase activity | IEP | Neighborhood |
BP | GO:0008610 | lipid biosynthetic process | IEP | Neighborhood |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Neighborhood |
MF | GO:0008825 | cyclopropane-fatty-acyl-phospholipid synthase activity | IEP | Neighborhood |
BP | GO:0009267 | cellular response to starvation | IEP | Neighborhood |
BP | GO:0009606 | tropism | IEP | Neighborhood |
BP | GO:0009629 | response to gravity | IEP | Neighborhood |
BP | GO:0009630 | gravitropism | IEP | Neighborhood |
MF | GO:0009672 | auxin:proton symporter activity | IEP | Neighborhood |
BP | GO:0009746 | response to hexose | IEP | Neighborhood |
BP | GO:0009749 | response to glucose | IEP | Neighborhood |
BP | GO:0009832 | plant-type cell wall biogenesis | IEP | Neighborhood |
BP | GO:0009834 | plant-type secondary cell wall biogenesis | IEP | Neighborhood |
BP | GO:0009913 | epidermal cell differentiation | IEP | Neighborhood |
CC | GO:0009925 | basal plasma membrane | IEP | Neighborhood |
BP | GO:0009958 | positive gravitropism | IEP | Neighborhood |
BP | GO:0009991 | response to extracellular stimulus | IEP | Neighborhood |
BP | GO:0010106 | cellular response to iron ion starvation | IEP | Neighborhood |
BP | GO:0010167 | response to nitrate | IEP | Neighborhood |
MF | GO:0010329 | auxin efflux transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0010453 | regulation of cell fate commitment | IEP | Neighborhood |
BP | GO:0010455 | positive regulation of cell fate commitment | IEP | Neighborhood |
MF | GO:0015036 | disulfide oxidoreductase activity | IEP | Neighborhood |
BP | GO:0015698 | inorganic anion transport | IEP | Neighborhood |
BP | GO:0015706 | nitrate transport | IEP | Neighborhood |
MF | GO:0015926 | glucosidase activity | IEP | Neighborhood |
BP | GO:0016128 | phytosteroid metabolic process | IEP | Neighborhood |
BP | GO:0016129 | phytosteroid biosynthetic process | IEP | Neighborhood |
BP | GO:0016131 | brassinosteroid metabolic process | IEP | Neighborhood |
BP | GO:0016132 | brassinosteroid biosynthetic process | IEP | Neighborhood |
MF | GO:0016668 | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor | IEP | Neighborhood |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Neighborhood |
MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Neighborhood |
MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | Neighborhood |
MF | GO:0016863 | intramolecular oxidoreductase activity, transposing C=C bonds | IEP | Neighborhood |
MF | GO:0019137 | thioglucosidase activity | IEP | Neighborhood |
MF | GO:0019825 | oxygen binding | IEP | Neighborhood |
BP | GO:0030001 | metal ion transport | IEP | Neighborhood |
MF | GO:0030599 | pectinesterase activity | IEP | Neighborhood |
BP | GO:0030855 | epithelial cell differentiation | IEP | Neighborhood |
BP | GO:0031667 | response to nutrient levels | IEP | Neighborhood |
BP | GO:0031668 | cellular response to extracellular stimulus | IEP | Neighborhood |
BP | GO:0031669 | cellular response to nutrient levels | IEP | Neighborhood |
BP | GO:0034284 | response to monosaccharide | IEP | Neighborhood |
BP | GO:0042546 | cell wall biogenesis | IEP | Neighborhood |
BP | GO:0042594 | response to starvation | IEP | Neighborhood |
BP | GO:0042964 | thioredoxin reduction | IEP | Neighborhood |
BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
BP | GO:0045165 | cell fate commitment | IEP | Neighborhood |
BP | GO:0045454 | cell redox homeostasis | IEP | Neighborhood |
BP | GO:0045597 | positive regulation of cell differentiation | IEP | Neighborhood |
BP | GO:0046685 | response to arsenic-containing substance | IEP | Neighborhood |
BP | GO:0048443 | stamen development | IEP | Neighborhood |
BP | GO:0048829 | root cap development | IEP | Neighborhood |
BP | GO:0071496 | cellular response to external stimulus | IEP | Neighborhood |
BP | GO:0071669 | plant-type cell wall organization or biogenesis | IEP | Neighborhood |
CC | GO:0071944 | cell periphery | IEP | Neighborhood |
BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR011598 | bHLH_dom | 210 | 251 |
No external refs found! |