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  5. Cpa|evm.model.tig00000382.38

Cpa|evm.model.tig00000382.38


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.BOP1 component


Gene families : OG0005003 (Archaeplastida) Phylogenetic Tree(s): OG0005003_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000382.38
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00157460 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 Archaeplastida
AMTR_s00007p00157660 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
AMTR_s00024p00239810 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 Archaeplastida
AT2G40360 No alias Transducin/WD40 repeat-like superfamily protein 0.07 Archaeplastida
Cre10.g417950 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
GSVIVT01004116001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
LOC_Os07g25440.1 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.16 Archaeplastida
MA_10426057g0010 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.05 Archaeplastida
Mp2g26050.1 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.1 Archaeplastida
Pp3c18_14790V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.11 Archaeplastida
Smo165451 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
Smo269521 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Solyc01g103720.4.1 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.1 Archaeplastida
Zm00001e017600_P002 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012953 BOP1_N_dom 164 422
IPR001680 WD40_repeat 676 710
IPR001680 WD40_repeat 428 460
No external refs found!