Coexpression cluster: Cluster_40 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006396 RNA processing 5.08% (6/118) 3.59 1.1e-05 0.001436
GO:0016741 transferase activity, transferring one-carbon groups 5.08% (6/118) 3.64 9e-06 0.002426
GO:0016070 RNA metabolic process 5.93% (7/118) 2.65 0.000135 0.005975
GO:0005730 nucleolus 1.69% (2/118) 7.12 6.8e-05 0.005977
GO:0008168 methyltransferase activity 4.24% (5/118) 3.46 9.4e-05 0.006223
GO:0034470 ncRNA processing 3.39% (4/118) 3.98 0.000121 0.006409
GO:0043226 organelle 5.08% (6/118) 2.69 0.000355 0.010449
GO:0043229 intracellular organelle 5.08% (6/118) 2.7 0.000336 0.011126
GO:0008033 tRNA processing 2.54% (3/118) 4.29 0.000476 0.012623
GO:0030684 preribosome 1.69% (2/118) 5.71 0.000622 0.012674
GO:0032040 small-subunit processome 1.69% (2/118) 6.12 0.000335 0.012689
GO:1901360 organic cyclic compound metabolic process 9.32% (11/118) 1.68 0.000678 0.01284
GO:0006725 cellular aromatic compound metabolic process 9.32% (11/118) 1.7 0.000605 0.013352
GO:0008152 metabolic process 17.8% (21/118) 1.08 0.00079 0.013964
GO:0046483 heterocycle metabolic process 9.32% (11/118) 1.7 0.000584 0.014065
GO:0008150 biological_process 23.73% (28/118) 0.87 0.001027 0.01512
GO:0042254 ribosome biogenesis 1.69% (2/118) 5.25 0.00121 0.015268
GO:0022613 ribonucleoprotein complex biogenesis 1.69% (2/118) 5.25 0.00121 0.015268
GO:0043227 membrane-bounded organelle 3.39% (4/118) 3.19 0.001 0.015589
GO:0043231 intracellular membrane-bounded organelle 3.39% (4/118) 3.19 0.001 0.015589
GO:0006139 nucleobase-containing compound metabolic process 8.47% (10/118) 1.66 0.001299 0.01565
GO:0034660 ncRNA metabolic process 3.39% (4/118) 3.14 0.001127 0.015719
GO:0044237 cellular metabolic process 13.56% (16/118) 1.21 0.001493 0.016489
GO:0044085 cellular component biogenesis 1.69% (2/118) 5.12 0.001447 0.016676
GO:0006807 nitrogen compound metabolic process 13.56% (16/118) 1.18 0.001766 0.017999
GO:0008173 RNA methyltransferase activity 1.69% (2/118) 5.01 0.001705 0.018075
GO:0003674 molecular_function 32.2% (38/118) 0.61 0.003207 0.031476
GO:0006189 'de novo' IMP biosynthetic process 0.85% (1/118) 7.71 0.004777 0.03836
GO:0006188 IMP biosynthetic process 0.85% (1/118) 7.71 0.004777 0.03836
GO:0000959 mitochondrial RNA metabolic process 0.85% (1/118) 7.71 0.004777 0.03836
GO:0046040 IMP metabolic process 0.85% (1/118) 7.71 0.004777 0.03836
GO:0044424 intracellular part 6.78% (8/118) 1.65 0.004159 0.039361
GO:0034641 cellular nitrogen compound metabolic process 8.47% (10/118) 1.38 0.005184 0.040404
GO:0005634 nucleus 2.54% (3/118) 3.19 0.004427 0.04045
GO:0006399 tRNA metabolic process 2.54% (3/118) 3.09 0.005383 0.040758
GO:0071704 organic substance metabolic process 13.56% (16/118) 1.0 0.00598 0.04402
GO:0044464 cell part 6.78% (8/118) 1.54 0.006557 0.046964
GO:0090304 nucleic acid metabolic process 5.93% (7/118) 1.67 0.006738 0.046987
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_39 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_166 0.027 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.036 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_192 0.039 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_228 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_190 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_231 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_253 0.029 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_57 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.027 Archaeplastida Compare
Gingko biloba HCCA Cluster_318 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.038 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.031 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.047 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.034 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_91 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.051 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.081 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_256 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.032 Archaeplastida Compare
Picea abies HCCA Cluster_478 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.065 Archaeplastida Compare
Oryza sativa HCCA Cluster_200 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.028 Archaeplastida Compare
Oryza sativa HCCA Cluster_316 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_75 0.041 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.043 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.052 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_243 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.048 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_22 0.033 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.102 Archaeplastida Compare
Sequences (118) (download table)

InterPro Domains

GO Terms

Family Terms