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  5. AT1G06580

AT1G06580


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0005757 (Archaeplastida) Phylogenetic Tree(s): OG0005757_tree ,
OG_05_0003900 (LandPlants) Phylogenetic Tree(s): OG_05_0003900_tree ,
OG_06_0002486 (SeedPlants) Phylogenetic Tree(s): OG_06_0002486_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G06580
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
AT1G63080 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
CC GO:0005819 spindle IEP Neighborhood
CC GO:0005884 actin filament IEP Neighborhood
BP GO:0006266 DNA ligation IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0016929 SUMO-specific protease activity IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0045727 positive regulation of translation IEP Neighborhood
BP GO:0051247 positive regulation of protein metabolic process IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
CC GO:0099080 supramolecular complex IEP Neighborhood
CC GO:0099081 supramolecular polymer IEP Neighborhood
CC GO:0099512 supramolecular fiber IEP Neighborhood
CC GO:0099513 polymeric cytoskeletal fiber IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 248 280
IPR002885 Pentatricopeptide_repeat 358 406
IPR002885 Pentatricopeptide_repeat 287 336
IPR002885 Pentatricopeptide_repeat 113 161
IPR002885 Pentatricopeptide_repeat 182 229
IPR002885 Pentatricopeptide_repeat 429 474
No external refs found!