Coexpression cluster: Cluster_247 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009536 plastid 50.0% (27/54) 1.86 0.0 0.0
GO:0009507 chloroplast 46.3% (25/54) 1.77 0.0 2e-06
GO:0044434 chloroplast part 25.93% (14/54) 2.57 0.0 1.2e-05
GO:0044435 plastid part 25.93% (14/54) 2.53 0.0 1.2e-05
GO:0044444 cytoplasmic part 66.67% (36/54) 0.94 2e-06 0.000216
GO:0031969 chloroplast membrane 7.41% (4/54) 4.73 1.6e-05 0.001681
GO:0042170 plastid membrane 7.41% (4/54) 4.57 2.4e-05 0.002231
GO:0009706 chloroplast inner membrane 5.56% (3/54) 5.13 8.8e-05 0.005108
GO:0009526 plastid envelope 12.96% (7/54) 2.73 8.4e-05 0.005377
GO:0009941 chloroplast envelope 12.96% (7/54) 2.74 8e-05 0.005639
GO:0009528 plastid inner membrane 5.56% (3/54) 5.03 0.000107 0.005709
GO:0016556 mRNA modification 7.41% (4/54) 4.15 7.6e-05 0.006095
GO:0015095 magnesium ion transmembrane transporter activity 3.7% (2/54) 6.83 0.000134 0.006554
GO:0031967 organelle envelope 12.96% (7/54) 2.57 0.000163 0.006941
GO:0031975 envelope 12.96% (7/54) 2.57 0.000163 0.006941
GO:0044422 organelle part 29.63% (16/54) 1.4 0.000201 0.00755
GO:0044446 intracellular organelle part 29.63% (16/54) 1.4 0.000196 0.007814
GO:0008252 nucleotidase activity 3.7% (2/54) 6.42 0.000244 0.008645
GO:0009657 plastid organization 9.26% (5/54) 3.08 0.000311 0.009932
GO:0072596 establishment of protein localization to chloroplast 5.56% (3/54) 4.44 0.000366 0.010157
GO:0045036 protein targeting to chloroplast 5.56% (3/54) 4.44 0.000366 0.010157
GO:0072598 protein localization to chloroplast 5.56% (3/54) 4.44 0.000366 0.010157
GO:0016070 RNA metabolic process 18.52% (10/54) 1.88 0.00031 0.010399
GO:0090304 nucleic acid metabolic process 22.22% (12/54) 1.62 0.000394 0.010483
GO:0045037 protein import into chloroplast stroma 3.7% (2/54) 6.0 0.000441 0.011261
GO:0009668 plastid membrane organization 7.41% (4/54) 3.38 0.000598 0.013623
GO:0010027 thylakoid membrane organization 7.41% (4/54) 3.38 0.000598 0.013623
GO:0016071 mRNA metabolic process 9.26% (5/54) 2.88 0.000577 0.014166
GO:0043168 anion binding 12.96% (7/54) 2.2 0.000773 0.015908
GO:0016853 isomerase activity 7.41% (4/54) 3.3 0.000733 0.016116
GO:0061024 membrane organization 7.41% (4/54) 3.29 0.000759 0.016145
GO:0009532 plastid stroma 11.11% (6/54) 2.38 0.000987 0.019087
GO:0009570 chloroplast stroma 11.11% (6/54) 2.38 0.000987 0.019087
GO:0035639 purine ribonucleoside triphosphate binding 11.11% (6/54) 2.36 0.001058 0.019857
GO:0006399 tRNA metabolic process 5.56% (3/54) 3.83 0.001243 0.020333
GO:0017076 purine nucleotide binding 11.11% (6/54) 2.33 0.001182 0.020378
GO:0009658 chloroplast organization 7.41% (4/54) 3.13 0.001134 0.020672
GO:0032553 ribonucleotide binding 11.11% (6/54) 2.32 0.001232 0.020688
GO:0032555 purine ribonucleotide binding 11.11% (6/54) 2.34 0.001172 0.020769
GO:0097367 carbohydrate derivative binding 11.11% (6/54) 2.3 0.001338 0.021339
GO:0004458 D-lactate dehydrogenase (cytochrome) activity 1.85% (1/54) 9.0 0.001953 0.023957
GO:0042794 plastid rRNA transcription 1.85% (1/54) 9.0 0.001953 0.023957
GO:0072374 carotene epsilon hydroxylase activity 1.85% (1/54) 9.0 0.001953 0.023957
GO:0016898 oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor 1.85% (1/54) 9.0 0.001953 0.023957
GO:0035452 extrinsic component of plastid membrane 1.85% (1/54) 9.0 0.001953 0.023957
GO:0019154 glycolate dehydrogenase activity 1.85% (1/54) 9.0 0.001953 0.023957
GO:0009974 zeinoxanthin epsilon hydroxylase activity 1.85% (1/54) 9.0 0.001953 0.023957
GO:0065002 intracellular protein transmembrane transport 5.56% (3/54) 3.7 0.001603 0.024348
GO:0071806 protein transmembrane transport 5.56% (3/54) 3.7 0.001603 0.024348
GO:0019866 organelle inner membrane 5.56% (3/54) 3.57 0.002067 0.024886
GO:0005524 ATP binding 9.26% (5/54) 2.54 0.001677 0.024888
GO:0046351 disaccharide biosynthetic process 3.7% (2/54) 4.83 0.002259 0.026209
GO:0016043 cellular component organization 24.07% (13/54) 1.26 0.002247 0.026546
GO:0030554 adenyl nucleotide binding 9.26% (5/54) 2.5 0.001886 0.02674
GO:0032559 adenyl ribonucleotide binding 9.26% (5/54) 2.5 0.001886 0.02674
GO:0043226 organelle 79.63% (43/54) 0.39 0.002522 0.028231
GO:0043229 intracellular organelle 79.63% (43/54) 0.39 0.002498 0.028456
GO:0008144 drug binding 11.11% (6/54) 2.1 0.002705 0.029256
GO:0044464 cell part 92.59% (50/54) 0.26 0.002679 0.02947
GO:0044424 intracellular part 87.04% (47/54) 0.31 0.003318 0.035282
GO:0046608 carotenoid isomerase activity 1.85% (1/54) 8.0 0.003902 0.036605
GO:0080085 signal recognition particle, chloroplast targeting 1.85% (1/54) 8.0 0.003902 0.036605
GO:0004457 lactate dehydrogenase activity 1.85% (1/54) 8.0 0.003902 0.036605
GO:0015693 magnesium ion transport 1.85% (1/54) 8.0 0.003902 0.036605
GO:1900871 chloroplast mRNA modification 1.85% (1/54) 8.0 0.003902 0.036605
GO:0009312 oligosaccharide biosynthetic process 3.7% (2/54) 4.42 0.003985 0.03685
GO:0016787 hydrolase activity 20.37% (11/54) 1.3 0.00417 0.036948
GO:0006396 RNA processing 11.11% (6/54) 1.98 0.00406 0.037004
GO:0006139 nucleobase-containing compound metabolic process 22.22% (12/54) 1.22 0.004161 0.037392
GO:0071840 cellular component organization or biogenesis 24.07% (13/54) 1.15 0.004286 0.037463
GO:0009793 embryo development ending in seed dormancy 9.26% (5/54) 2.28 0.003646 0.03752
GO:0009790 embryo development 9.26% (5/54) 2.28 0.003646 0.03752
GO:0009451 RNA modification 7.41% (4/54) 2.66 0.003731 0.037779
GO:0043231 intracellular membrane-bounded organelle 77.78% (42/54) 0.37 0.004525 0.039016
GO:0034660 ncRNA metabolic process 7.41% (4/54) 2.56 0.004751 0.039366
GO:0043227 membrane-bounded organelle 77.78% (42/54) 0.37 0.004717 0.039597
GO:0016866 intramolecular transferase activity 3.7% (2/54) 4.3 0.004662 0.039654
GO:0000166 nucleotide binding 11.11% (6/54) 1.86 0.005898 0.043253
GO:1901265 nucleoside phosphate binding 11.11% (6/54) 1.86 0.005898 0.043253
GO:0009662 etioplast organization 1.85% (1/54) 7.42 0.005847 0.043884
GO:0004839 ubiquitin activating enzyme activity 1.85% (1/54) 7.42 0.005847 0.043884
GO:0031304 intrinsic component of mitochondrial inner membrane 1.85% (1/54) 7.42 0.005847 0.043884
GO:0019388 galactose catabolic process 1.85% (1/54) 7.42 0.005847 0.043884
GO:0008253 5'-nucleotidase activity 1.85% (1/54) 7.42 0.005847 0.043884
GO:0009303 rRNA transcription 1.85% (1/54) 7.42 0.005847 0.043884
GO:0032365 intracellular lipid transport 1.85% (1/54) 7.42 0.005847 0.043884
GO:0036094 small molecule binding 12.96% (7/54) 1.69 0.005625 0.046007
GO:0005984 disaccharide metabolic process 5.56% (3/54) 2.99 0.006392 0.046342
GO:0003824 catalytic activity 40.74% (22/54) 0.73 0.006475 0.046414
GO:0043170 macromolecule metabolic process 31.48% (17/54) 0.89 0.006651 0.047148
GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition 1.85% (1/54) 7.0 0.007788 0.049196
GO:0010215 cellulose microfibril organization 1.85% (1/54) 7.0 0.007788 0.049196
GO:0050660 flavin adenine dinucleotide binding 1.85% (1/54) 7.0 0.007788 0.049196
GO:1900865 chloroplast RNA modification 1.85% (1/54) 7.0 0.007788 0.049196
GO:0042781 3'-tRNA processing endoribonuclease activity 1.85% (1/54) 7.0 0.007788 0.049196
GO:0042780 tRNA 3'-end processing 1.85% (1/54) 7.0 0.007788 0.049196
GO:0050307 sucrose-phosphate phosphatase activity 1.85% (1/54) 7.0 0.007788 0.049196
GO:0004614 phosphoglucomutase activity 1.85% (1/54) 7.0 0.007788 0.049196
GO:0019255 glucose 1-phosphate metabolic process 1.85% (1/54) 7.0 0.007788 0.049196
GO:0007275 multicellular organism development 11.11% (6/54) 1.81 0.007037 0.049334
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_49 0.028 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_152 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_74 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_153 0.032 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_225 0.034 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_256 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_264 0.037 Archaeplastida Compare
Gingko biloba HCCA Cluster_115 0.028 Archaeplastida Compare
Gingko biloba HCCA Cluster_203 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_245 0.027 Archaeplastida Compare
Gingko biloba HCCA Cluster_305 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_39 0.033 Archaeplastida Compare
Zea mays HCCA Cluster_132 0.033 Archaeplastida Compare
Zea mays HCCA Cluster_180 0.042 Archaeplastida Compare
Zea mays HCCA Cluster_185 0.031 Archaeplastida Compare
Zea mays HCCA Cluster_199 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_319 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_347 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_48 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_65 0.037 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_173 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.041 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_143 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_207 0.028 Archaeplastida Compare
Picea abies HCCA Cluster_53 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_88 0.03 Archaeplastida Compare
Picea abies HCCA Cluster_92 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_114 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_269 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_401 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_465 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_469 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_114 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_256 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_264 0.03 Archaeplastida Compare
Oryza sativa HCCA Cluster_298 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_308 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_9 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_30 0.025 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_196 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_139 0.029 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_160 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_211 0.038 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_224 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_35 0.029 Archaeplastida Compare
Vitis vinifera HCCA Cluster_72 0.034 Archaeplastida Compare
Vitis vinifera HCCA Cluster_124 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_137 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_155 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_162 0.027 Archaeplastida Compare
Vitis vinifera HCCA Cluster_218 0.033 Archaeplastida Compare
Vitis vinifera HCCA Cluster_236 0.021 Archaeplastida Compare
Sequences (54) (download table)

InterPro Domains

GO Terms

Family Terms