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  5. Cpa|evm.model.tig00000402.16

Cpa|evm.model.tig00000402.16


Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.SCL28/30/33 splicing factor


Gene families : OG0001329 (Archaeplastida) Phylogenetic Tree(s): OG0001329_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000402.16
Cluster HCCA: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
AT3G55460 SCL30, At-SCL30 SC35-like splicing factor 30 0.03 Archaeplastida
Cre13.g586916 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
GSVIVT01016562001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
GSVIVT01022010001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.01 Archaeplastida
LOC_Os03g24890.1 No alias SCL28/30/33 RNA splicing factor 0.02 Archaeplastida
LOC_Os07g43950.1 No alias SCL28/30/33 RNA splicing factor 0.02 Archaeplastida
MA_10428606g0010 No alias SCL28/30/33 RNA splicing factor 0.02 Archaeplastida
MA_122608g0010 No alias SCL28/30/33 RNA splicing factor 0.03 Archaeplastida
MA_89588g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c5_15610V3.1 No alias SC35-like splicing factor 30A 0.01 Archaeplastida
Pp3c6_9110V3.1 No alias SC35-like splicing factor 30A 0.01 Archaeplastida
Solyc01g005820.4.1 No alias SCL28/30/33 RNA splicing factor 0.02 Archaeplastida
Solyc01g080660.3.1 No alias SCL28/30/33 RNA splicing factor 0.01 Archaeplastida
Zm00001e002967_P002 No alias SCL28/30/33 RNA splicing factor 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 12 80
No external refs found!