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  5. Cpa|evm.model.tig00000615.55

Cpa|evm.model.tig00000615.55


Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I/II complex.CAP-E2/SMC2 component


Gene families : OG0004321 (Archaeplastida) Phylogenetic Tree(s): OG0004321_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000615.55
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00193070 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.chromatin... 0.05 Archaeplastida
AT3G47460 ATSMC2 Structural maintenance of chromosomes (SMC) family protein 0.04 Archaeplastida
AT5G62410 TTN3, ATSMC4,... structural maintenance of chromosomes 2 0.05 Archaeplastida
Cre02.g086650 No alias Cell cycle.mitosis and meiosis.chromatin... 0.08 Archaeplastida
GSVIVT01018715001 No alias Cell cycle.mitosis and meiosis.chromatin... 0.05 Archaeplastida
Gb_17843 No alias component CAP-E2/SMC2 of condensin I/II complex 0.1 Archaeplastida
LOC_Os01g67740.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.03 Archaeplastida
MA_15346g0010 No alias component CAP-E2/SMC2 of condensin I/II complex 0.04 Archaeplastida
MA_5349g0010 No alias Structural maintenance of chromosomes protein 2-1... 0.01 Archaeplastida
Mp1g04330.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.09 Archaeplastida
Pp3c13_8840V3.1 No alias structural maintenance of chromosomes 2 0.04 Archaeplastida
Smo137981 No alias Cell cycle.mitosis and meiosis.chromatin... 0.01 Archaeplastida
Solyc03g093250.2.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.06 Archaeplastida
Solyc03g093260.3.1 No alias component CAP-E2/SMC2 of condensin I/II complex 0.06 Archaeplastida
Zm00001e018930_P001 No alias component CAP-E2/SMC2 of condensin I/II complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR010935 SMC_hinge 522 640
IPR003395 RecF/RecN/SMC_N 2 1164
No external refs found!