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  5. AT1G72800

AT1G72800


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0011542 (Archaeplastida) Phylogenetic Tree(s): OG0011542_tree ,
OG_05_0011444 (LandPlants) Phylogenetic Tree(s): OG_05_0011444_tree ,
OG_06_0011550 (SeedPlants) Phylogenetic Tree(s): OG_06_0011550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G72800
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT5G05430 No alias RNA-binding protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
CC GO:0000781 chromosome, telomeric region IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003691 double-stranded telomeric DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003979 UDP-glucose 6-dehydrogenase activity IEP Neighborhood
MF GO:0004557 alpha-galactosidase activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005740 mitochondrial envelope IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006065 UDP-glucuronate biosynthetic process IEP Neighborhood
BP GO:0006109 regulation of carbohydrate metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006672 ceramide metabolic process IEP Neighborhood
BP GO:0006677 glycosylceramide metabolic process IEP Neighborhood
BP GO:0006687 glycosphingolipid metabolic process IEP Neighborhood
BP GO:0006970 response to osmotic stress IEP Neighborhood
BP GO:0006972 hyperosmotic response IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0009414 response to water deprivation IEP Neighborhood
BP GO:0009415 response to water IEP Neighborhood
BP GO:0009651 response to salt stress IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0009737 response to abscisic acid IEP Neighborhood
BP GO:0009739 response to gibberellin IEP Neighborhood
BP GO:0009741 response to brassinosteroid IEP Neighborhood
BP GO:0009787 regulation of abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP Neighborhood
BP GO:0009806 lignan metabolic process IEP Neighborhood
BP GO:0009807 lignan biosynthetic process IEP Neighborhood
BP GO:0009888 tissue development IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0009916 alternative oxidase activity IEP Neighborhood
BP GO:0009937 regulation of gibberellic acid mediated signaling pathway IEP Neighborhood
BP GO:0009939 positive regulation of gibberellic acid mediated signaling pathway IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0009968 negative regulation of signal transduction IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010087 phloem or xylem histogenesis IEP Neighborhood
BP GO:0010089 xylem development IEP Neighborhood
BP GO:0010230 alternative respiration IEP Neighborhood
BP GO:0010325 raffinose family oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0010371 regulation of gibberellin biosynthetic process IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010393 galacturonan metabolic process IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010413 glucuronoxylan metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010581 regulation of starch biosynthetic process IEP Neighborhood
BP GO:0010623 programmed cell death involved in cell development IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0010648 negative regulation of cell communication IEP Neighborhood
BP GO:0010675 regulation of cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0010962 regulation of glucan biosynthetic process IEP Neighborhood
BP GO:0012501 programmed cell death IEP Neighborhood
BP GO:0014070 response to organic cyclic compound IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016137 glycoside metabolic process IEP Neighborhood
BP GO:0016139 glycoside catabolic process IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0017040 N-acylsphingosine amidohydrolase activity IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019377 glycolipid catabolic process IEP Neighborhood
BP GO:0019747 regulation of isoprenoid metabolic process IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0023057 negative regulation of signaling IEP Neighborhood
BP GO:0030149 sphingolipid catabolic process IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0030968 endoplasmic reticulum unfolded protein response IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032881 regulation of polysaccharide metabolic process IEP Neighborhood
BP GO:0032885 regulation of polysaccharide biosynthetic process IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034976 response to endoplasmic reticulum stress IEP Neighborhood
MF GO:0042162 telomeric DNA binding IEP Neighborhood
BP GO:0042538 hyperosmotic salinity response IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043255 regulation of carbohydrate biosynthetic process IEP Neighborhood
BP GO:0043455 regulation of secondary metabolic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
CC GO:0045298 tubulin complex IEP Neighborhood
BP GO:0045488 pectin metabolic process IEP Neighborhood
BP GO:0045491 xylan metabolic process IEP Neighborhood
BP GO:0045492 xylan biosynthetic process IEP Neighborhood
BP GO:0046398 UDP-glucuronate metabolic process IEP Neighborhood
BP GO:0046466 membrane lipid catabolic process IEP Neighborhood
BP GO:0046477 glycosylceramide catabolic process IEP Neighborhood
BP GO:0046479 glycosphingolipid catabolic process IEP Neighborhood
BP GO:0046514 ceramide catabolic process IEP Neighborhood
BP GO:0048585 negative regulation of response to stimulus IEP Neighborhood
BP GO:0048658 anther wall tapetum development IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055046 microgametogenesis IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0080037 negative regulation of cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080147 root hair cell development IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097305 response to alcohol IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1900030 regulation of pectin biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901419 regulation of response to alcohol IEP Neighborhood
BP GO:1901420 negative regulation of response to alcohol IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1905957 regulation of cellular response to alcohol IEP Neighborhood
BP GO:1905958 negative regulation of cellular response to alcohol IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000652 regulation of secondary cell wall biogenesis IEP Neighborhood
BP GO:2000762 regulation of phenylpropanoid metabolic process IEP Neighborhood
BP GO:2000904 regulation of starch metabolic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 251 301
No external refs found!