1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00000754.31

Cpa|evm.model.tig00000754.31


Description : DNA ligase 1 OS=Arabidopsis thaliana


Gene families : OG0002154 (Archaeplastida) Phylogenetic Tree(s): OG0002154_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000754.31
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AT1G08130 ATLIG1, LIG1 DNA ligase 1 0.03 Archaeplastida
Cre07.g325716 No alias DNA damage response.DNA repair mechanisms.base excision... 0.12 Archaeplastida
GSVIVT01031470001 No alias DNA damage response.DNA repair mechanisms.base excision... 0.02 Archaeplastida
Mp1g15320.1 No alias DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.01 Archaeplastida
Zm00001e004508_P002 No alias DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012310 DNA_ligase_ATP-dep_cent 679 814
IPR012308 DNA_ligase_ATP-dep_N 318 519
IPR012309 DNA_ligase_ATP-dep_C 839 952
No external refs found!