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  5. Cpa|evm.model.tig00000792.35

Cpa|evm.model.tig00000792.35


Description : DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica


Gene families : OG0000758 (Archaeplastida) Phylogenetic Tree(s): OG0000758_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000792.35
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G16280 AtRH36, SWA3, RH36 RNA helicase 36 0.07 Archaeplastida
Cre10.g420900 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.17 Archaeplastida
Cre12.g505200 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.05 Archaeplastida
GSVIVT01009935001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.11 Archaeplastida
Gb_16576 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.04 Archaeplastida
Gb_23737 No alias SSU processome assembly factor (SWA3) 0.03 Archaeplastida
Gb_36370 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os03g46610.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.05 Archaeplastida
LOC_Os07g43980.1 No alias SSU processome assembly factor (SWA3) 0.05 Archaeplastida
LOC_Os12g29660.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.06 Archaeplastida
Mp1g19410.1 No alias SSU processome assembly factor (SWA3) 0.14 Archaeplastida
Mp4g20180.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.09 Archaeplastida
Mp4g21330.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.08 Archaeplastida
Pp3c16_16520V3.1 No alias RNA helicase 36 0.03 Archaeplastida
Pp3c1_37280V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.05 Archaeplastida
Pp3c9_14310V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.08 Archaeplastida
Smo107914 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.02 Archaeplastida
Smo268770 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
Solyc04g081580.4.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... 0.05 Archaeplastida
Solyc10g005520.3.1 No alias SSU processome assembly factor (SWA3) 0.03 Archaeplastida
Solyc10g007550.3.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e010143_P002 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.08 Archaeplastida
Zm00001e013281_P004 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.04 Archaeplastida
Zm00001e035639_P002 No alias SSU processome assembly factor (SWA3) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 267 373
IPR011545 DEAD/DEAH_box_helicase_dom 57 225
No external refs found!