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  5. Cpa|evm.model.tig00000852.39

Cpa|evm.model.tig00000852.39


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP4/PCN assembly factor


Gene families : OG0004823 (Archaeplastida) Phylogenetic Tree(s): OG0004823_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000852.39
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00140150 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
AT1G27470 No alias transducin family protein / WD-40 repeat family protein 0.02 Archaeplastida
AT4G07410 No alias Transducin family protein / WD-40 repeat family protein 0.04 Archaeplastida
Cre13.g606850 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
GSVIVT01009321001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 Archaeplastida
LOC_Os03g52470.1 No alias SSU processome assembly factor (UTP4/PCN) 0.02 Archaeplastida
MA_10435752g0010 No alias SSU processome assembly factor (UTP4/PCN) 0.05 Archaeplastida
MA_29512g0010 No alias SSU processome assembly factor (UTP4/PCN) 0.03 Archaeplastida
Mp5g05000.1 No alias SSU processome assembly factor (UTP4/PCN) 0.04 Archaeplastida
Pp3c19_13580V3.1 No alias transducin family protein / WD-40 repeat family protein 0.01 Archaeplastida
Pp3c22_14490V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.11 Archaeplastida
Smo74975 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
Solyc04g077680.3.1 No alias SSU processome assembly factor (UTP4/PCN) 0.05 Archaeplastida
Solyc12g088290.2.1 No alias SSU processome assembly factor (UTP4/PCN) 0.03 Archaeplastida
Zm00001e005587_P002 No alias SSU processome assembly factor (UTP4/PCN) 0.08 Archaeplastida
Zm00001e012090_P001 No alias SSU processome assembly factor (UTP4/PCN) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 164 188
IPR001680 WD40_repeat 18 50
IPR001680 WD40_repeat 118 143
No external refs found!