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  5. Cpa|evm.model.tig00000944.16

Cpa|evm.model.tig00000944.16


Description : RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000944.16
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00202090 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.01 Archaeplastida
AMTR_s00061p00032260 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00061p00142700 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00166p00060690 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.02 Archaeplastida
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.02 Archaeplastida
GSVIVT01007596001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
GSVIVT01017884001 No alias No description available 0.01 Archaeplastida
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.04 Archaeplastida
GSVIVT01030490001 No alias Glycine-rich RNA-binding protein 4, mitochondrial... 0.01 Archaeplastida
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
Gb_05747 No alias component psPSRP2 of small ribosomal subunit proteome 0.02 Archaeplastida
Gb_07052 No alias RNA editing factor (ORRM) 0.01 Archaeplastida
Gb_33449 No alias component psPSRP2 of small ribosomal subunit proteome 0.01 Archaeplastida
LOC_Os03g25960.1 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os03g47800.1 No alias RNA chaperone (RZ1|GR-RBP) 0.01 Archaeplastida
LOC_Os03g61990.3 No alias RNA chaperone (RZ1|GR-RBP) 0.01 Archaeplastida
LOC_Os09g39180.1 No alias RNA editing factor (CP31) 0.02 Archaeplastida
MA_1460g0010 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.02 Archaeplastida
MA_367032g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_717958g0010 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.01 Archaeplastida
MA_7844926g0010 No alias Organelle RRM domain-containing protein 1, chloroplastic... 0.02 Archaeplastida
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.01 Archaeplastida
Mp8g03420.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 Archaeplastida
Pp3c12_9890V3.1 No alias chloroplast RNA-binding protein 29 0.06 Archaeplastida
Solyc01g006940.4.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.01 Archaeplastida
Solyc03g111840.3.1 No alias RNA editing factor (CP31) 0.02 Archaeplastida
Solyc09g007850.3.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.02 Archaeplastida
Solyc09g090960.4.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.02 Archaeplastida
Zm00001e016211_P001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 334 404
IPR000504 RRM_dom 114 179
IPR000504 RRM_dom 29 98
No external refs found!