Coexpression cluster: Cluster_136 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0033014 tetrapyrrole biosynthetic process 4.81% (5/104) 6.21 0.0 1e-06
GO:0033013 tetrapyrrole metabolic process 4.81% (5/104) 5.97 0.0 2e-06
GO:0016875 ligase activity, forming carbon-oxygen bonds 4.81% (5/104) 4.79 1e-06 4e-05
GO:0004812 aminoacyl-tRNA ligase activity 4.81% (5/104) 4.79 1e-06 4e-05
GO:0043038 amino acid activation 4.81% (5/104) 4.82 1e-06 5.3e-05
GO:0043039 tRNA aminoacylation 4.81% (5/104) 4.82 1e-06 5.3e-05
GO:0016874 ligase activity 5.77% (6/104) 3.91 3e-06 9.1e-05
GO:0006520 cellular amino acid metabolic process 5.77% (6/104) 3.94 3e-06 9.2e-05
GO:0006779 porphyrin-containing compound biosynthetic process 2.88% (3/104) 6.31 6e-06 0.000156
GO:0140101 catalytic activity, acting on a tRNA 4.81% (5/104) 4.21 8e-06 0.000161
GO:1901564 organonitrogen compound metabolic process 14.42% (15/104) 1.95 7e-06 0.000174
GO:0003824 catalytic activity 25.0% (26/104) 1.32 9e-06 0.000179
GO:0006778 porphyrin-containing compound metabolic process 2.88% (3/104) 6.02 1.2e-05 0.000211
GO:0006399 tRNA metabolic process 4.81% (5/104) 4.0 1.5e-05 0.000258
GO:0004853 uroporphyrinogen decarboxylase activity 1.92% (2/104) 7.89 1.8e-05 0.000275
GO:0019752 carboxylic acid metabolic process 5.77% (6/104) 3.45 1.9e-05 0.000276
GO:0006418 tRNA aminoacylation for protein translation 3.85% (4/104) 4.61 2.2e-05 0.000284
GO:0006082 organic acid metabolic process 5.77% (6/104) 3.4 2.3e-05 0.000288
GO:0043436 oxoacid metabolic process 5.77% (6/104) 3.42 2.1e-05 0.000296
GO:0034660 ncRNA metabolic process 4.81% (5/104) 3.64 5.2e-05 0.000605
GO:0003674 molecular_function 37.5% (39/104) 0.83 9.4e-05 0.001046
GO:0008152 metabolic process 20.19% (21/104) 1.26 0.000132 0.001409
GO:0000049 tRNA binding 1.92% (2/104) 6.57 0.000174 0.001779
GO:0006725 cellular aromatic compound metabolic process 10.58% (11/104) 1.88 0.000202 0.00198
GO:1901360 organic cyclic compound metabolic process 10.58% (11/104) 1.86 0.000228 0.002144
GO:0140098 catalytic activity, acting on RNA 4.81% (5/104) 3.15 0.000261 0.002357
GO:0051186 cofactor metabolic process 3.85% (4/104) 3.64 0.000301 0.002623
GO:1901566 organonitrogen compound biosynthetic process 5.77% (6/104) 2.72 0.000318 0.00267
GO:0006807 nitrogen compound metabolic process 15.38% (16/104) 1.36 0.00044 0.003568
GO:0046483 heterocycle metabolic process 9.62% (10/104) 1.75 0.000805 0.006306
GO:0019438 aromatic compound biosynthetic process 5.77% (6/104) 2.36 0.001141 0.008381
GO:0016831 carboxy-lyase activity 1.92% (2/104) 5.31 0.001127 0.008545
GO:1901362 organic cyclic compound biosynthetic process 5.77% (6/104) 2.3 0.001417 0.01009
GO:0034641 cellular nitrogen compound metabolic process 9.62% (10/104) 1.56 0.002078 0.01436
GO:0016830 carbon-carbon lyase activity 1.92% (2/104) 4.8 0.002291 0.015383
GO:0051188 cofactor biosynthetic process 2.88% (3/104) 3.5 0.002397 0.015645
GO:0044281 small molecule metabolic process 5.77% (6/104) 2.1 0.002838 0.018024
GO:0016070 RNA metabolic process 4.81% (5/104) 2.34 0.003143 0.018937
GO:0044237 cellular metabolic process 13.46% (14/104) 1.2 0.003069 0.018977
GO:0071704 organic substance metabolic process 14.42% (15/104) 1.09 0.004285 0.019746
GO:0006423 cysteinyl-tRNA aminoacylation 0.96% (1/104) 7.89 0.00421 0.019788
GO:0004655 porphobilinogen synthase activity 0.96% (1/104) 7.89 0.00421 0.019788
GO:0031400 negative regulation of protein modification process 0.96% (1/104) 7.89 0.00421 0.019788
GO:0006571 tyrosine biosynthetic process 0.96% (1/104) 7.89 0.00421 0.019788
GO:0046406 magnesium protoporphyrin IX methyltransferase activity 0.96% (1/104) 7.89 0.00421 0.019788
GO:0008977 prephenate dehydrogenase (NAD+) activity 0.96% (1/104) 7.89 0.00421 0.019788
GO:0004865 protein serine/threonine phosphatase inhibitor activity 0.96% (1/104) 7.89 0.00421 0.019788
GO:0032515 negative regulation of phosphoprotein phosphatase activity 0.96% (1/104) 7.89 0.00421 0.019788
GO:0004817 cysteine-tRNA ligase activity 0.96% (1/104) 7.89 0.00421 0.019788
GO:0035308 negative regulation of protein dephosphorylation 0.96% (1/104) 7.89 0.00421 0.019788
GO:0004665 prephenate dehydrogenase (NADP+) activity 0.96% (1/104) 7.89 0.00421 0.019788
GO:0016829 lyase activity 3.85% (4/104) 2.6 0.004414 0.019947
GO:0008238 exopeptidase activity 1.92% (2/104) 4.25 0.004944 0.021923
GO:0043666 regulation of phosphoprotein phosphatase activity 0.96% (1/104) 6.89 0.008403 0.026329
GO:0032269 negative regulation of cellular protein metabolic process 0.96% (1/104) 6.89 0.008403 0.026329
GO:0019212 phosphatase inhibitor activity 0.96% (1/104) 6.89 0.008403 0.026329
GO:0010923 negative regulation of phosphatase activity 0.96% (1/104) 6.89 0.008403 0.026329
GO:0010563 negative regulation of phosphorus metabolic process 0.96% (1/104) 6.89 0.008403 0.026329
GO:0045936 negative regulation of phosphate metabolic process 0.96% (1/104) 6.89 0.008403 0.026329
GO:0004864 protein phosphatase inhibitor activity 0.96% (1/104) 6.89 0.008403 0.026329
GO:0006570 tyrosine metabolic process 0.96% (1/104) 6.89 0.008403 0.026329
GO:0035304 regulation of protein dephosphorylation 0.96% (1/104) 6.89 0.008403 0.026329
GO:0035305 negative regulation of dephosphorylation 0.96% (1/104) 6.89 0.008403 0.026329
GO:0016805 dipeptidase activity 0.96% (1/104) 6.89 0.008403 0.026329
GO:0004418 hydroxymethylbilane synthase activity 0.96% (1/104) 6.89 0.008403 0.026329
GO:0016211 ammonia ligase activity 0.96% (1/104) 6.89 0.008403 0.026329
GO:0032977 membrane insertase activity 0.96% (1/104) 6.89 0.008403 0.026329
GO:0004356 glutamate-ammonia ligase activity 0.96% (1/104) 6.89 0.008403 0.026329
GO:0016880 acid-ammonia (or amide) ligase activity 0.96% (1/104) 6.89 0.008403 0.026329
GO:0051248 negative regulation of protein metabolic process 0.96% (1/104) 6.89 0.008403 0.026329
GO:0015995 chlorophyll biosynthetic process 0.96% (1/104) 6.89 0.008403 0.026329
GO:0070567 cytidylyltransferase activity 0.96% (1/104) 6.89 0.008403 0.026329
GO:0015994 chlorophyll metabolic process 0.96% (1/104) 6.89 0.008403 0.026329
GO:0005506 iron ion binding 1.92% (2/104) 3.8 0.009021 0.027532
GO:0009058 biosynthetic process 6.73% (7/104) 1.59 0.008925 0.027597
GO:0018130 heterocycle biosynthetic process 4.81% (5/104) 2.09 0.006481 0.028204
GO:0008150 biological_process 22.12% (23/104) 0.77 0.006935 0.029632
GO:0043086 negative regulation of catalytic activity 0.96% (1/104) 6.31 0.012578 0.036047
GO:0035303 regulation of dephosphorylation 0.96% (1/104) 6.31 0.012578 0.036047
GO:0044092 negative regulation of molecular function 0.96% (1/104) 6.31 0.012578 0.036047
GO:0051346 negative regulation of hydrolase activity 0.96% (1/104) 6.31 0.012578 0.036047
GO:0010921 regulation of phosphatase activity 0.96% (1/104) 6.31 0.012578 0.036047
GO:0051336 regulation of hydrolase activity 0.96% (1/104) 5.89 0.016736 0.043699
GO:0008565 protein transporter activity 0.96% (1/104) 5.89 0.016736 0.043699
GO:0019888 protein phosphatase regulator activity 0.96% (1/104) 5.89 0.016736 0.043699
GO:0031399 regulation of protein modification process 0.96% (1/104) 5.89 0.016736 0.043699
GO:0017006 protein-tetrapyrrole linkage 0.96% (1/104) 5.89 0.016736 0.043699
GO:0017007 protein-bilin linkage 0.96% (1/104) 5.89 0.016736 0.043699
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 0.96% (1/104) 5.89 0.016736 0.043699
GO:0017009 protein-phycocyanobilin linkage 0.96% (1/104) 5.89 0.016736 0.043699
GO:0044271 cellular nitrogen compound biosynthetic process 4.81% (5/104) 1.71 0.018794 0.048534
GO:0044249 cellular biosynthetic process 5.77% (6/104) 1.51 0.019187 0.049009
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_98 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_149 0.024 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_185 0.046 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_179 0.039 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_239 0.039 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_42 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_49 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_72 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_128 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_135 0.034 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_143 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_162 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_1 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_36 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_65 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_135 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_209 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_281 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_3 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_39 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_65 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_70 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_107 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_199 0.034 Archaeplastida Compare
Zea mays HCCA Cluster_318 0.026 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_4 0.041 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_52 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_114 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_123 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_145 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.037 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_88 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_294 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_145 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_362 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_54 0.04 Archaeplastida Compare
Oryza sativa HCCA Cluster_75 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_90 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_148 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_272 0.023 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_25 0.026 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_32 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.03 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_119 0.05 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_169 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_253 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_52 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_72 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_93 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_162 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_176 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_178 0.08 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_33 0.026 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_56 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_61 0.043 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_92 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_129 0.021 Archaeplastida Compare
Sequences (104) (download table)

InterPro Domains

GO Terms

Family Terms