Cpa|evm.model.tig00001024.5


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B3 component


Gene families : OG0002788 (Archaeplastida) Phylogenetic Tree(s): OG0002788_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001024.5
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Cre08.g372800 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.07 Archaeplastida
GSVIVT01005970001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Gb_38044 No alias component SF3B3 of splicing factor 3B complex 0.02 Archaeplastida
LOC_Os02g04480.1 No alias component SF3B3 of splicing factor 3B complex 0.02 Archaeplastida
Mp7g13330.1 No alias component SF3B3 of splicing factor 3B complex 0.02 Archaeplastida
Pp3c12_11240V3.1 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.04 Archaeplastida
Pp3c16_16800V3.1 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.06 Archaeplastida
Pp3c4_5190V3.1 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.04 Archaeplastida
Solyc04g010260.3.1 No alias component SF3B3 of splicing factor 3B complex 0.04 Archaeplastida
Zm00001e013611_P001 No alias component SF3B3 of splicing factor 3B complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 838 969
No external refs found!