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  5. Cpa|evm.model.tig00001049.16

Cpa|evm.model.tig00001049.16


Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop1/fibrillarin methyltransferase component


Gene families : OG0003455 (Archaeplastida) Phylogenetic Tree(s): OG0003455_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001049.16
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00218020 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
AT4G25630 FIB2, ATFIB2 fibrillarin 2 0.04 Archaeplastida
AT5G52470 FIB1, ATFIB1,... fibrillarin 1 0.05 Archaeplastida
Cre02.g077300 No alias RNA processing.RNA modification.rRNA/tRNA... 0.08 Archaeplastida
GSVIVT01028887001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 Archaeplastida
Gb_33899 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.03 Archaeplastida
LOC_Os05g08360.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.02 Archaeplastida
MA_124463g0010 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.03 Archaeplastida
Mp2g12880.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.05 Archaeplastida
Pp3c16_12410V3.1 No alias fibrillarin 2 0.03 Archaeplastida
Pp3c27_4160V3.1 No alias fibrillarin 2 0.02 Archaeplastida
Pp3c5_11200V3.1 No alias fibrillarin 2 0.04 Archaeplastida
Pp3c6_12420V3.1 No alias fibrillarin 2 0.07 Archaeplastida
Smo171051 No alias RNA processing.RNA modification.rRNA/tRNA... 0.01 Archaeplastida
Solyc03g025270.3.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.05 Archaeplastida
Zm00001e023572_P001 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000692 Fibrillarin 66 262
No external refs found!