Coexpression cluster: Cluster_144 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 9.42% (13/138) 3.31 0.0 0.0
GO:0006351 transcription, DNA-templated 4.35% (6/138) 4.78 0.0 4e-06
GO:0097659 nucleic acid-templated transcription 4.35% (6/138) 4.78 0.0 4e-06
GO:0097159 organic cyclic compound binding 20.29% (28/138) 1.65 0.0 5e-06
GO:1901363 heterocyclic compound binding 20.29% (28/138) 1.65 0.0 5e-06
GO:0003674 molecular_function 39.13% (54/138) 0.89 1e-06 4e-05
GO:0003676 nucleic acid binding 11.59% (16/138) 2.12 1e-06 4.2e-05
GO:0032774 RNA biosynthetic process 4.35% (6/138) 4.0 2e-06 5.5e-05
GO:0005488 binding 28.26% (39/138) 1.11 2e-06 5.7e-05
GO:0043170 macromolecule metabolic process 15.22% (21/138) 1.68 2e-06 5.7e-05
GO:0090304 nucleic acid metabolic process 9.42% (13/138) 2.34 2e-06 6e-05
GO:0044237 cellular metabolic process 16.67% (23/138) 1.5 6e-06 0.000124
GO:0034470 ncRNA processing 3.62% (5/138) 4.08 1.2e-05 0.000209
GO:0140098 catalytic activity, acting on RNA 5.07% (7/138) 3.23 1.1e-05 0.000219
GO:0016740 transferase activity 11.59% (16/138) 1.83 1.2e-05 0.00022
GO:0034660 ncRNA metabolic process 4.35% (6/138) 3.5 1.6e-05 0.000235
GO:0008168 methyltransferase activity 4.35% (6/138) 3.5 1.6e-05 0.000235
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.9% (4/138) 4.73 1.5e-05 0.000248
GO:0006807 nitrogen compound metabolic process 15.94% (22/138) 1.42 2.3e-05 0.000285
GO:0097747 RNA polymerase activity 2.9% (4/138) 4.58 2.3e-05 0.000291
GO:0034062 5'-3' RNA polymerase activity 2.9% (4/138) 4.58 2.3e-05 0.000291
GO:0006396 RNA processing 4.35% (6/138) 3.37 2.6e-05 0.000308
GO:0016741 transferase activity, transferring one-carbon groups 4.35% (6/138) 3.41 2.2e-05 0.000315
GO:0006725 cellular aromatic compound metabolic process 10.14% (14/138) 1.82 4.6e-05 0.00051
GO:1901360 organic cyclic compound metabolic process 10.14% (14/138) 1.8 5.3e-05 0.000569
GO:0006139 nucleobase-containing compound metabolic process 9.42% (13/138) 1.81 9e-05 0.000804
GO:0044238 primary metabolic process 15.94% (22/138) 1.3 8.1e-05 0.000804
GO:0005524 ATP binding 10.14% (14/138) 1.75 7.9e-05 0.00081
GO:0030554 adenyl nucleotide binding 10.14% (14/138) 1.73 8.8e-05 0.000812
GO:0032559 adenyl ribonucleotide binding 10.14% (14/138) 1.73 8.5e-05 0.000818
GO:0003824 catalytic activity 21.01% (29/138) 1.06 9.5e-05 0.000822
GO:0009987 cellular process 18.12% (25/138) 1.17 0.000101 0.000846
GO:0035639 purine ribonucleoside triphosphate binding 10.87% (15/138) 1.62 0.000117 0.000947
GO:0032555 purine ribonucleotide binding 10.87% (15/138) 1.61 0.000126 0.000991
GO:0017076 purine nucleotide binding 10.87% (15/138) 1.6 0.000134 0.000995
GO:0008144 drug binding 10.14% (14/138) 1.67 0.000132 0.001012
GO:0071704 organic substance metabolic process 15.94% (22/138) 1.24 0.000147 0.001068
GO:0006364 rRNA processing 2.17% (3/138) 4.75 0.000181 0.001105
GO:0016072 rRNA metabolic process 2.17% (3/138) 4.75 0.000181 0.001105
GO:0032553 ribonucleotide binding 10.87% (15/138) 1.58 0.000159 0.001119
GO:0034641 cellular nitrogen compound metabolic process 10.14% (14/138) 1.64 0.000167 0.00112
GO:0044260 cellular macromolecule metabolic process 10.14% (14/138) 1.63 0.000176 0.001123
GO:0046483 heterocycle metabolic process 9.42% (13/138) 1.72 0.000172 0.001126
GO:0097367 carbohydrate derivative binding 10.87% (15/138) 1.57 0.000164 0.00113
GO:0043168 anion binding 10.87% (15/138) 1.46 0.000381 0.002171
GO:0000166 nucleotide binding 10.87% (15/138) 1.46 0.000381 0.002171
GO:1901265 nucleoside phosphate binding 10.87% (15/138) 1.46 0.000381 0.002171
GO:0034645 cellular macromolecule biosynthetic process 4.35% (6/138) 2.65 0.000408 0.002275
GO:0032040 small-subunit processome 1.45% (2/138) 5.9 0.000458 0.002505
GO:0043167 ion binding 13.04% (18/138) 1.24 0.000609 0.003198
GO:0036094 small molecule binding 10.87% (15/138) 1.39 0.000607 0.003255
GO:0030684 preribosome 1.45% (2/138) 5.48 0.000849 0.004374
GO:0009059 macromolecule biosynthetic process 4.35% (6/138) 2.43 0.000903 0.004566
GO:0016779 nucleotidyltransferase activity 2.9% (4/138) 3.22 0.00092 0.004567
GO:0019438 aromatic compound biosynthetic process 5.07% (7/138) 2.18 0.000961 0.004683
GO:0008152 metabolic process 16.67% (23/138) 0.99 0.001165 0.005577
GO:1901362 organic cyclic compound biosynthetic process 5.07% (7/138) 2.12 0.001228 0.005773
GO:0016772 transferase activity, transferring phosphorus-containing groups 6.52% (9/138) 1.69 0.002034 0.009399
GO:0034654 nucleobase-containing compound biosynthetic process 4.35% (6/138) 2.19 0.00215 0.009768
GO:0008150 biological_process 21.74% (30/138) 0.74 0.002987 0.013344
GO:0043412 macromolecule modification 5.8% (8/138) 1.7 0.003373 0.014821
GO:0006457 protein folding 1.45% (2/138) 4.48 0.003532 0.015268
GO:0018130 heterocycle biosynthetic process 4.35% (6/138) 1.95 0.004801 0.020424
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 1.45% (2/138) 4.24 0.004978 0.020847
GO:0016571 histone methylation 0.72% (1/138) 7.48 0.005587 0.022346
GO:0018022 peptidyl-lysine methylation 0.72% (1/138) 7.48 0.005587 0.022346
GO:0034968 histone lysine methylation 0.72% (1/138) 7.48 0.005587 0.022346
GO:0003723 RNA binding 2.9% (4/138) 2.47 0.005992 0.023615
GO:0044267 cellular protein metabolic process 5.8% (8/138) 1.53 0.006844 0.026203
GO:0005634 nucleus 2.17% (3/138) 2.96 0.006831 0.026532
GO:0046983 protein dimerization activity 1.45% (2/138) 3.96 0.007259 0.0274
GO:0006399 tRNA metabolic process 2.17% (3/138) 2.86 0.008283 0.03083
GO:0006355 regulation of transcription, DNA-templated 2.9% (4/138) 2.3 0.008982 0.030861
GO:0051252 regulation of RNA metabolic process 2.9% (4/138) 2.3 0.008982 0.030861
GO:1903506 regulation of nucleic acid-templated transcription 2.9% (4/138) 2.3 0.008982 0.030861
GO:2001141 regulation of RNA biosynthetic process 2.9% (4/138) 2.3 0.008982 0.030861
GO:0036211 protein modification process 5.07% (7/138) 1.6 0.008562 0.031009
GO:0006464 cellular protein modification process 5.07% (7/138) 1.6 0.008562 0.031009
GO:0019219 regulation of nucleobase-containing compound metabolic process 2.9% (4/138) 2.26 0.009857 0.033439
GO:2000112 regulation of cellular macromolecule biosynthetic process 2.9% (4/138) 2.24 0.010549 0.033655
GO:0031326 regulation of cellular biosynthetic process 2.9% (4/138) 2.24 0.010549 0.033655
GO:0010468 regulation of gene expression 2.9% (4/138) 2.24 0.010549 0.033655
GO:0009889 regulation of biosynthetic process 2.9% (4/138) 2.24 0.010549 0.033655
GO:0010556 regulation of macromolecule biosynthetic process 2.9% (4/138) 2.24 0.010549 0.033655
GO:0080090 regulation of primary metabolic process 2.9% (4/138) 2.19 0.01177 0.036677
GO:0051171 regulation of nitrogen compound metabolic process 2.9% (4/138) 2.19 0.01177 0.036677
GO:0018193 peptidyl-amino acid modification 1.45% (2/138) 3.58 0.012167 0.03748
GO:0060255 regulation of macromolecule metabolic process 2.9% (4/138) 2.15 0.012809 0.038571
GO:0031323 regulation of cellular metabolic process 2.9% (4/138) 2.15 0.012809 0.038571
GO:0008033 tRNA processing 1.45% (2/138) 3.48 0.013773 0.041013
GO:0019222 regulation of metabolic process 2.9% (4/138) 2.11 0.014189 0.041787
GO:0043227 membrane-bounded organelle 2.17% (3/138) 2.55 0.014924 0.043008
GO:0043231 intracellular membrane-bounded organelle 2.17% (3/138) 2.55 0.014924 0.043008
GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process 0.72% (1/138) 5.9 0.016667 0.044225
GO:0005787 signal peptidase complex 0.72% (1/138) 5.9 0.016667 0.044225
GO:0006465 signal peptide processing 0.72% (1/138) 5.9 0.016667 0.044225
GO:0009094 L-phenylalanine biosynthetic process 0.72% (1/138) 5.9 0.016667 0.044225
GO:0140102 catalytic activity, acting on a rRNA 0.72% (1/138) 5.9 0.016667 0.044225
GO:0008649 rRNA methyltransferase activity 0.72% (1/138) 5.9 0.016667 0.044225
GO:0004664 prephenate dehydratase activity 0.72% (1/138) 5.9 0.016667 0.044225
GO:0044271 cellular nitrogen compound biosynthetic process 4.35% (6/138) 1.56 0.01647 0.046957
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_39 0.035 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_152 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_160 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_162 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.033 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_192 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.03 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_244 0.026 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_260 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_263 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_131 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_39 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.045 Archaeplastida Compare
Zea mays HCCA Cluster_70 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.041 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.031 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_85 0.032 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.042 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_160 0.027 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_121 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.041 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.042 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_239 0.029 Archaeplastida Compare
Picea abies HCCA Cluster_261 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_54 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.047 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.03 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.03 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.044 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.048 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.03 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.054 Archaeplastida Compare
Vitis vinifera HCCA Cluster_178 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_181 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.022 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_22 0.037 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.049 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_118 0.028 Archaeplastida Compare
Sequences (138) (download table)

InterPro Domains

GO Terms

Family Terms