Cpa|evm.model.tig00001085.3

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).NHP2L1/SNU13 snRNP component

Gene families : OG0006047 (Archaeplastida) Phylogenetic Tree(s): OG0006047_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00001085.3
Cluster	HCCA: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method	Actions
GSVIVT01008841001	No alias	Cell cycle.interphase.DNA...	0.01	Archaeplastida
Solyc06g060150.3.1	No alias	component RFC5 of PCNA sliding clamp loader complex	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45	386	467
IPR003959	ATPase_AAA_core	69	186
IPR013748	Rep_factorC_C	254	339

External Links

No external refs found!

Cpa|evm.model.tig00001085.3

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation