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  5. Cpa|evm.model.tig00001085.4

Cpa|evm.model.tig00001085.4


Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001085.4
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00197p00028970 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
GSVIVT01002746001 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
GSVIVT01011033001 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
Gb_07185 No alias histone (H2A) 0.02 Archaeplastida
LOC_Os07g36140.1 No alias histone (H2A) 0.02 Archaeplastida
MA_10434390g0020 No alias histone (H2A) 0.02 Archaeplastida
MA_94328g0020 No alias histone (H2A) 0.01 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 95 128
IPR007125 Histone_H2A/H2B/H3 6 92
No external refs found!