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  5. Cpa|evm.model.tig00001154.10

Cpa|evm.model.tig00001154.10


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SF1 pre-mRNA splicing factor


Gene families : OG0001047 (Archaeplastida) Phylogenetic Tree(s): OG0001047_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001154.10
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00180690 evm_27.TU.AmTr_v1... Splicing factor-like protein 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT3G32940 No alias RNA-binding KH domain-containing protein 0.03 Archaeplastida
AT5G51300 No alias splicing factor-related 0.04 Archaeplastida
Cre09.g386731 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Cre12.g553750 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
GSVIVT01014212001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Gb_19921 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
LOC_Os08g01070.2 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10432977g0010 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
MA_11962g0020 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
MA_160895g0010 No alias pre-mRNA splicing factor (SF1) 0.04 Archaeplastida
Mp7g15050.1 No alias pre-mRNA splicing factor (SF1) 0.06 Archaeplastida
Pp3c20_6220V3.1 No alias splicing factor-related 0.02 Archaeplastida
Zm00001e008383_P001 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 192 257
IPR032570 SF1-HH 87 173
No external refs found!