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  5. Cpa|evm.model.tig00001623.10

Cpa|evm.model.tig00001623.10


Description : Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000306 (Archaeplastida) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001623.10
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00203740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39620,... 0.02 Archaeplastida
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.01 Archaeplastida
GSVIVT01038096001 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.01 Archaeplastida
Gb_14850 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Gb_18854 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.01 Archaeplastida
LOC_Os02g51480.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.01 Archaeplastida
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.01 Archaeplastida
LOC_Os03g19650.3 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.01 Archaeplastida
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.01 Archaeplastida
MA_10431478g0010 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.01 Archaeplastida
Smo119487 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.01 Archaeplastida
Smo432504 No alias No description available 0.01 Archaeplastida
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.01 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.02 Archaeplastida
Zm00001e025825_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e032726_P001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR033443 PPR_long 302 429
IPR002885 Pentatricopeptide_repeat 265 295
IPR002885 Pentatricopeptide_repeat 445 463
IPR002885 Pentatricopeptide_repeat 192 239
IPR002885 Pentatricopeptide_repeat 465 517
No external refs found!