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  5. Cpa|evm.model.tig00020531.53

Cpa|evm.model.tig00020531.53


Description : Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 OS=Arabidopsis thaliana


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020531.53
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00074370 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.01 Archaeplastida
AMTR_s00090p00083520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
AT1G32490 ESP3, EMB2733 RNA helicase family protein 0.02 Archaeplastida
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.02 Archaeplastida
Cre07.g349100 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
Cre08.g358563 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
GSVIVT01007911001 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 Archaeplastida
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Gb_30670 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.01 Archaeplastida
Gb_34264 No alias E3 ubiquitin ligase (RBR-Helicase) 0.02 Archaeplastida
LOC_Os01g11370.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 Archaeplastida
MA_277016g0010 No alias RNA helicase (Prp2) 0.02 Archaeplastida
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Pp3c1_18490V3.1 No alias RNA helicase family protein 0.01 Archaeplastida
Pp3c2_27130V3.1 No alias RNA helicase family protein 0.01 Archaeplastida
Smo76120 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Solyc03g115390.4.1 No alias RNA helicase (Prp2) 0.02 Archaeplastida
Solyc10g076910.2.1 No alias RNA helicase (Prp16) 0.02 Archaeplastida
Zm00001e022095_P001 No alias RNA helicase (Prp2) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011709 DUF1605 996 1074
IPR011545 DEAD/DEAH_box_helicase_dom 493 645
IPR001650 Helicase_C 692 783
IPR007502 Helicase-assoc_dom 853 938
No external refs found!