Cpa|evm.model.tig00020734.25

Description : DEAD-box ATP-dependent RNA helicase 53, mitochondrial OS=Arabidopsis thaliana

Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020734.25
Cluster	HCCA: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method
AT3G22310	PMH1, ATRH9	putative mitochondrial RNA helicase 1	0.03	Archaeplastida
GSVIVT01000821001	No alias	RNA processing.organelle machineries.RNA...	0.02	Archaeplastida
Gb_10087	No alias	DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa...	0.01	Archaeplastida
Gb_35745	No alias	RH3 plastidial RNA basal splicing factor	0.02	Archaeplastida
LOC_Os09g34910.1	No alias	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.01	Archaeplastida
MA_17924g0010	No alias	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.04	Archaeplastida
Pp3c1_40060V3.1	No alias	DEAD box RNA helicase (RH3)	0.01	Archaeplastida
Solyc06g035450.4.1	No alias	DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia...	0.01	Archaeplastida
Solyc07g044760.3.1	No alias	RNA helicase (PMH)	0.02	Archaeplastida
Zm00001e034728_P002	No alias	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	309	385
IPR011545	DEAD/DEAH_box_helicase_dom	201	266
IPR011545	DEAD/DEAH_box_helicase_dom	116	190

External Links

No external refs found!