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  5. AT1G80880

AT1G80880


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0011441 (SeedPlants) Phylogenetic Tree(s): OG_06_0011441_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G80880
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00263440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
AMTR_s00019p00238660 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g20300,... 0.03 Archaeplastida
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 Archaeplastida
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.03 Archaeplastida
GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.03 Archaeplastida
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.04 Archaeplastida
Gb_31799 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os01g05860.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os03g51840.1 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.02 Archaeplastida
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.03 Archaeplastida
MA_953698g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc05g008330.3.1 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.04 Archaeplastida
Zm00001e010274_P001 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.02 Archaeplastida
Zm00001e015617_P001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
Zm00001e028873_P001 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.06 Archaeplastida
Zm00001e036197_P001 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0007005 mitochondrion organization IEP Neighborhood
BP GO:0007006 mitochondrial membrane organization IEP Neighborhood
BP GO:0007007 inner mitochondrial membrane organization IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0016233 telomere capping IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031048 chromatin silencing by small RNA IEP Neighborhood
MF GO:0032451 demethylase activity IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035514 DNA demethylase activity IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
MF GO:0042162 telomeric DNA binding IEP Neighborhood
MF GO:0043047 single-stranded telomeric DNA binding IEP Neighborhood
BP GO:0045039 protein import into mitochondrial inner membrane IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051568 histone H3-K4 methylation IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
MF GO:0098847 sequence-specific single stranded DNA binding IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
BP GO:1990542 mitochondrial transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR033443 PPR_long 296 437
IPR002885 Pentatricopeptide_repeat 230 246
IPR002885 Pentatricopeptide_repeat 470 496
No external refs found!