Aliases : ATPRD3, PRD3
Description : putative recombination initiation defects 3
Gene families : OG0010531 (Archaeplastida) Phylogenetic Tree(s): OG0010531_tree ,
OG_05_0010529 (LandPlants) Phylogenetic Tree(s): OG_05_0010529_tree ,
OG_06_0010834 (SeedPlants) Phylogenetic Tree(s): OG_06_0010834_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT1G01690 | |
Cluster | HCCA: Cluster_10 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
LOC_Os03g01590.1 | No alias | meiotic double strand break initiation accessory protein... | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | ND | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
BP | GO:0009553 | embryo sac development | IMP | Interproscan |
BP | GO:0009555 | pollen development | IMP | Interproscan |
BP | GO:0042138 | meiotic DNA double-strand break formation | IMP | Interproscan |
BP | GO:0051026 | chiasma assembly | IMP | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity | IEP | Neighborhood |
BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Neighborhood |
BP | GO:0000278 | mitotic cell cycle | IEP | Neighborhood |
BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Neighborhood |
BP | GO:0000913 | preprophase band assembly | IEP | Neighborhood |
BP | GO:0001932 | regulation of protein phosphorylation | IEP | Neighborhood |
BP | GO:0001933 | negative regulation of protein phosphorylation | IEP | Neighborhood |
BP | GO:0003002 | regionalization | IEP | Neighborhood |
BP | GO:0003006 | developmental process involved in reproduction | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003677 | DNA binding | IEP | Neighborhood |
MF | GO:0003691 | double-stranded telomeric DNA binding | IEP | Neighborhood |
MF | GO:0003697 | single-stranded DNA binding | IEP | Neighborhood |
MF | GO:0004523 | RNA-DNA hybrid ribonuclease activity | IEP | Neighborhood |
MF | GO:0004702 | obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity | IEP | Neighborhood |
MF | GO:0004826 | phenylalanine-tRNA ligase activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
CC | GO:0005938 | cell cortex | IEP | Neighborhood |
BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
BP | GO:0006260 | DNA replication | IEP | Neighborhood |
BP | GO:0006261 | DNA-dependent DNA replication | IEP | Neighborhood |
BP | GO:0006282 | regulation of DNA repair | IEP | Neighborhood |
BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
BP | GO:0006342 | chromatin silencing | IEP | Neighborhood |
BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0006366 | transcription by RNA polymerase II | IEP | Neighborhood |
BP | GO:0006432 | phenylalanyl-tRNA aminoacylation | IEP | Neighborhood |
BP | GO:0006469 | negative regulation of protein kinase activity | IEP | Neighborhood |
BP | GO:0007010 | cytoskeleton organization | IEP | Neighborhood |
BP | GO:0007017 | microtubule-based process | IEP | Neighborhood |
BP | GO:0007049 | cell cycle | IEP | Neighborhood |
BP | GO:0007346 | regulation of mitotic cell cycle | IEP | Neighborhood |
BP | GO:0007389 | pattern specification process | IEP | Neighborhood |
BP | GO:0008283 | cell proliferation | IEP | Neighborhood |
CC | GO:0009328 | phenylalanine-tRNA ligase complex | IEP | Neighborhood |
BP | GO:0009554 | megasporogenesis | IEP | Neighborhood |
BP | GO:0009560 | embryo sac egg cell differentiation | IEP | Neighborhood |
CC | GO:0009574 | preprophase band | IEP | Neighborhood |
BP | GO:0009799 | specification of symmetry | IEP | Neighborhood |
BP | GO:0009855 | determination of bilateral symmetry | IEP | Neighborhood |
BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
BP | GO:0009890 | negative regulation of biosynthetic process | IEP | Neighborhood |
BP | GO:0009892 | negative regulation of metabolic process | IEP | Neighborhood |
BP | GO:0009944 | polarity specification of adaxial/abaxial axis | IEP | Neighborhood |
BP | GO:0009965 | leaf morphogenesis | IEP | Neighborhood |
BP | GO:0010014 | meristem initiation | IEP | Neighborhood |
BP | GO:0010051 | xylem and phloem pattern formation | IEP | Neighborhood |
BP | GO:0010058 | regulation of atrichoblast fate specification | IEP | Neighborhood |
BP | GO:0010059 | positive regulation of atrichoblast fate specification | IEP | Neighborhood |
BP | GO:0010061 | regulation of trichoblast fate specification | IEP | Neighborhood |
BP | GO:0010063 | positive regulation of trichoblast fate specification | IEP | Neighborhood |
BP | GO:0010071 | root meristem specification | IEP | Neighborhood |
BP | GO:0010073 | meristem maintenance | IEP | Neighborhood |
BP | GO:0010118 | stomatal movement | IEP | Neighborhood |
BP | GO:0010252 | auxin homeostasis | IEP | Neighborhood |
BP | GO:0010305 | leaf vascular tissue pattern formation | IEP | Neighborhood |
BP | GO:0010389 | regulation of G2/M transition of mitotic cell cycle | IEP | Neighborhood |
BP | GO:0010440 | stomatal lineage progression | IEP | Neighborhood |
BP | GO:0010453 | regulation of cell fate commitment | IEP | Neighborhood |
BP | GO:0010455 | positive regulation of cell fate commitment | IEP | Neighborhood |
BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0010563 | negative regulation of phosphorus metabolic process | IEP | Neighborhood |
BP | GO:0010564 | regulation of cell cycle process | IEP | Neighborhood |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Neighborhood |
BP | GO:0010928 | regulation of auxin mediated signaling pathway | IEP | Neighborhood |
BP | GO:0016458 | gene silencing | IEP | Neighborhood |
BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
BP | GO:0016570 | histone modification | IEP | Neighborhood |
MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | Neighborhood |
MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Neighborhood |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0019220 | regulation of phosphate metabolic process | IEP | Neighborhood |
BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
BP | GO:0022412 | cellular process involved in reproduction in multicellular organism | IEP | Neighborhood |
BP | GO:0022603 | regulation of anatomical structure morphogenesis | IEP | Neighborhood |
BP | GO:0030154 | cell differentiation | IEP | Neighborhood |
CC | GO:0030863 | cortical cytoskeleton | IEP | Neighborhood |
BP | GO:0030865 | cortical cytoskeleton organization | IEP | Neighborhood |
CC | GO:0030981 | cortical microtubule cytoskeleton | IEP | Neighborhood |
BP | GO:0031048 | chromatin silencing by small RNA | IEP | Neighborhood |
BP | GO:0031056 | regulation of histone modification | IEP | Neighborhood |
BP | GO:0031060 | regulation of histone methylation | IEP | Neighborhood |
BP | GO:0031122 | cytoplasmic microtubule organization | IEP | Neighborhood |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | Neighborhood |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | Neighborhood |
BP | GO:0031399 | regulation of protein modification process | IEP | Neighborhood |
BP | GO:0031400 | negative regulation of protein modification process | IEP | Neighborhood |
BP | GO:0031538 | negative regulation of anthocyanin metabolic process | IEP | Neighborhood |
BP | GO:0031935 | regulation of chromatin silencing | IEP | Neighborhood |
BP | GO:0032268 | regulation of cellular protein metabolic process | IEP | Neighborhood |
BP | GO:0032269 | negative regulation of cellular protein metabolic process | IEP | Neighborhood |
BP | GO:0033044 | regulation of chromosome organization | IEP | Neighborhood |
CC | GO:0033588 | Elongator holoenzyme complex | IEP | Neighborhood |
BP | GO:0033673 | negative regulation of kinase activity | IEP | Neighborhood |
BP | GO:0035265 | organ growth | IEP | Neighborhood |
BP | GO:0040029 | regulation of gene expression, epigenetic | IEP | Neighborhood |
BP | GO:0042023 | DNA endoreduplication | IEP | Neighborhood |
BP | GO:0042127 | regulation of cell proliferation | IEP | Neighborhood |
MF | GO:0042162 | telomeric DNA binding | IEP | Neighborhood |
BP | GO:0042325 | regulation of phosphorylation | IEP | Neighborhood |
BP | GO:0042326 | negative regulation of phosphorylation | IEP | Neighborhood |
BP | GO:0042659 | regulation of cell fate specification | IEP | Neighborhood |
BP | GO:0042660 | positive regulation of cell fate specification | IEP | Neighborhood |
MF | GO:0043047 | single-stranded telomeric DNA binding | IEP | Neighborhood |
BP | GO:0043086 | negative regulation of catalytic activity | IEP | Neighborhood |
BP | GO:0043549 | regulation of kinase activity | IEP | Neighborhood |
MF | GO:0043565 | sequence-specific DNA binding | IEP | Neighborhood |
BP | GO:0043609 | regulation of carbon utilization | IEP | Neighborhood |
BP | GO:0043622 | cortical microtubule organization | IEP | Neighborhood |
BP | GO:0044092 | negative regulation of molecular function | IEP | Neighborhood |
CC | GO:0044430 | cytoskeletal part | IEP | Neighborhood |
BP | GO:0044786 | cell cycle DNA replication | IEP | Neighborhood |
CC | GO:0045298 | tubulin complex | IEP | Neighborhood |
BP | GO:0045597 | positive regulation of cell differentiation | IEP | Neighborhood |
BP | GO:0045736 | negative regulation of cyclin-dependent protein serine/threonine kinase activity | IEP | Neighborhood |
BP | GO:0045786 | negative regulation of cell cycle | IEP | Neighborhood |
BP | GO:0045814 | negative regulation of gene expression, epigenetic | IEP | Neighborhood |
BP | GO:0045859 | regulation of protein kinase activity | IEP | Neighborhood |
BP | GO:0045892 | negative regulation of transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0045936 | negative regulation of phosphate metabolic process | IEP | Neighborhood |
BP | GO:0048367 | shoot system development | IEP | Neighborhood |
BP | GO:0048449 | floral organ formation | IEP | Neighborhood |
BP | GO:0048451 | petal formation | IEP | Neighborhood |
BP | GO:0048453 | sepal formation | IEP | Neighborhood |
BP | GO:0048519 | negative regulation of biological process | IEP | Neighborhood |
BP | GO:0048523 | negative regulation of cellular process | IEP | Neighborhood |
BP | GO:0048580 | regulation of post-embryonic development | IEP | Neighborhood |
BP | GO:0048646 | anatomical structure formation involved in morphogenesis | IEP | Neighborhood |
BP | GO:0048731 | system development | IEP | Neighborhood |
BP | GO:0048831 | regulation of shoot system development | IEP | Neighborhood |
BP | GO:0048869 | cellular developmental process | IEP | Neighborhood |
BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
BP | GO:0050790 | regulation of catalytic activity | IEP | Neighborhood |
BP | GO:0050793 | regulation of developmental process | IEP | Neighborhood |
BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
BP | GO:0051052 | regulation of DNA metabolic process | IEP | Neighborhood |
BP | GO:0051094 | positive regulation of developmental process | IEP | Neighborhood |
BP | GO:0051128 | regulation of cellular component organization | IEP | Neighborhood |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0051174 | regulation of phosphorus metabolic process | IEP | Neighborhood |
BP | GO:0051239 | regulation of multicellular organismal process | IEP | Neighborhood |
BP | GO:0051240 | positive regulation of multicellular organismal process | IEP | Neighborhood |
BP | GO:0051246 | regulation of protein metabolic process | IEP | Neighborhood |
BP | GO:0051248 | negative regulation of protein metabolic process | IEP | Neighborhood |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | Neighborhood |
BP | GO:0051338 | regulation of transferase activity | IEP | Neighborhood |
BP | GO:0051348 | negative regulation of transferase activity | IEP | Neighborhood |
BP | GO:0051570 | regulation of histone H3-K9 methylation | IEP | Neighborhood |
BP | GO:0051726 | regulation of cell cycle | IEP | Neighborhood |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
BP | GO:0060968 | regulation of gene silencing | IEP | Neighborhood |
BP | GO:0065001 | specification of axis polarity | IEP | Neighborhood |
BP | GO:0065007 | biological regulation | IEP | Neighborhood |
BP | GO:0071322 | cellular response to carbohydrate stimulus | IEP | Neighborhood |
BP | GO:0071324 | cellular response to disaccharide stimulus | IEP | Neighborhood |
BP | GO:0071329 | cellular response to sucrose stimulus | IEP | Neighborhood |
BP | GO:0071900 | regulation of protein serine/threonine kinase activity | IEP | Neighborhood |
BP | GO:0071901 | negative regulation of protein serine/threonine kinase activity | IEP | Neighborhood |
BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
BP | GO:0090332 | stomatal closure | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
MF | GO:0098847 | sequence-specific single stranded DNA binding | IEP | Neighborhood |
CC | GO:0099568 | cytoplasmic region | IEP | Neighborhood |
BP | GO:1900109 | regulation of histone H3-K9 dimethylation | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
BP | GO:1901987 | regulation of cell cycle phase transition | IEP | Neighborhood |
BP | GO:1901990 | regulation of mitotic cell cycle phase transition | IEP | Neighborhood |
BP | GO:1902275 | regulation of chromatin organization | IEP | Neighborhood |
BP | GO:1902679 | negative regulation of RNA biosynthetic process | IEP | Neighborhood |
BP | GO:1902749 | regulation of cell cycle G2/M phase transition | IEP | Neighborhood |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
BP | GO:1903507 | negative regulation of nucleic acid-templated transcription | IEP | Neighborhood |
BP | GO:1903888 | regulation of plant epidermal cell differentiation | IEP | Neighborhood |
BP | GO:1903890 | positive regulation of plant epidermal cell differentiation | IEP | Neighborhood |
BP | GO:1904029 | regulation of cyclin-dependent protein kinase activity | IEP | Neighborhood |
BP | GO:1904030 | negative regulation of cyclin-dependent protein kinase activity | IEP | Neighborhood |
BP | GO:1905393 | plant organ formation | IEP | Neighborhood |
BP | GO:1905421 | regulation of plant organ morphogenesis | IEP | Neighborhood |
BP | GO:1905423 | positive regulation of plant organ morphogenesis | IEP | Neighborhood |
BP | GO:1990069 | stomatal opening | IEP | Neighborhood |
BP | GO:2000024 | regulation of leaf development | IEP | Neighborhood |
BP | GO:2000026 | regulation of multicellular organismal development | IEP | Neighborhood |
BP | GO:2000038 | regulation of stomatal complex development | IEP | Neighborhood |
BP | GO:2000067 | regulation of root morphogenesis | IEP | Neighborhood |
BP | GO:2000070 | regulation of response to water deprivation | IEP | Neighborhood |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:2000113 | negative regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:2000123 | positive regulation of stomatal complex development | IEP | Neighborhood |
BP | GO:2001020 | regulation of response to DNA damage stimulus | IEP | Neighborhood |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
No InterPro domains available for this sequence
No external refs found! |