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  5. Cpa|evm.model.tig00020848.19

Cpa|evm.model.tig00020848.19


Description : DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana


Gene families : OG0004769 (Archaeplastida) Phylogenetic Tree(s): OG0004769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020848.19
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00192780 evm_27.TU.AmTr_v1... DNA-directed RNA polymerases II, IV and V subunit 3... 0.02 Archaeplastida
AT1G60850 ATRPAC42, AAC42 DNA-directed RNA polymerase family protein 0.02 Archaeplastida
Cre07.g313302 No alias DNA-directed RNA polymerases IV and V subunit 3B... 0.03 Archaeplastida
LOC_Os03g18410.1 No alias DNA-directed RNA polymerases II, IV and V subunit 3... 0.04 Archaeplastida
MA_842965g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp6g21330.1 No alias DNA-directed RNA polymerases II, IV and V subunit 3... 0.04 Archaeplastida
Pp3c5_15220V3.1 No alias RNA polymerase I subunit 43 0.04 Archaeplastida
Solyc12g015780.2.1 No alias DNA-directed RNA polymerases II, IV and V subunit 3... 0.05 Archaeplastida
Zm00001e025351_P001 No alias DNA-directed RNA polymerases IV and V subunit 3B... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 71 355
IPR011262 DNA-dir_RNA_pol_insert 117 248
No external refs found!