AT2G01570 (RGA, RGA1)


Aliases : RGA, RGA1

Description : GRAS family transcription factor family protein


Gene families : OG0001710 (Archaeplastida) Phylogenetic Tree(s): OG0001710_tree ,
OG_05_0001098 (LandPlants) Phylogenetic Tree(s): OG_05_0001098_tree ,
OG_06_0001138 (SeedPlants) Phylogenetic Tree(s): OG_06_0001138_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G01570
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00207840 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRAS... 0.03 Archaeplastida
AMTR_s00122p00135250 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRAS... 0.04 Archaeplastida
GSVIVT01011710001 No alias RNA biosynthesis.transcriptional activation.GRAS... 0.03 Archaeplastida
LOC_Os05g49930.1 No alias DELLA-type gibberellin signal transducer. transcription... 0.03 Archaeplastida
Mp8g03980.1 No alias transcription factor (GRAS) 0.04 Archaeplastida
Pp3c22_7230V3.1 No alias GRAS family transcription factor family protein 0.02 Archaeplastida
Solyc11g011260.1.1 No alias DELLA-type gibberellin signal transducer. transcription... 0.06 Archaeplastida
Zm00001e005412_P001 No alias DELLA-type gibberellin signal transducer. transcription... 0.02 Archaeplastida
Zm00001e012213_P001 No alias DELLA-type gibberellin signal transducer. transcription... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IDA Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity TAS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005634 nucleus TAS Interproscan
BP GO:0006096 glycolytic process RCA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated TAS Interproscan
BP GO:0006833 water transport RCA Interproscan
BP GO:0006972 hyperosmotic response RCA Interproscan
BP GO:0007030 Golgi organization RCA Interproscan
BP GO:0009266 response to temperature stimulus RCA Interproscan
BP GO:0009651 response to salt stress IGI Interproscan
BP GO:0009651 response to salt stress RCA Interproscan
BP GO:0009723 response to ethylene IGI Interproscan
BP GO:0009723 response to ethylene RCA Interproscan
BP GO:0009733 response to auxin RCA Interproscan
BP GO:0009737 response to abscisic acid IGI Interproscan
BP GO:0009737 response to abscisic acid RCA Interproscan
BP GO:0009740 gibberellic acid mediated signaling pathway RCA Interproscan
BP GO:0009740 gibberellic acid mediated signaling pathway TAS Interproscan
BP GO:0009845 seed germination RCA Interproscan
BP GO:0009863 salicylic acid mediated signaling pathway RCA Interproscan
BP GO:0009867 jasmonic acid mediated signaling pathway IGI Interproscan
BP GO:0009867 jasmonic acid mediated signaling pathway RCA Interproscan
BP GO:0009938 negative regulation of gibberellic acid mediated signaling pathway IGI Interproscan
BP GO:0010029 regulation of seed germination IGI Interproscan
BP GO:0010162 seed dormancy process RCA Interproscan
BP GO:0010187 negative regulation of seed germination IGI Interproscan
BP GO:0010218 response to far red light IEP Interproscan
BP GO:0010325 raffinose family oligosaccharide biosynthetic process RCA Interproscan
BP GO:0032880 regulation of protein localization RCA Interproscan
BP GO:0042176 regulation of protein catabolic process IMP Interproscan
BP GO:0042538 hyperosmotic salinity response IGI Interproscan
BP GO:0042538 hyperosmotic salinity response RCA Interproscan
BP GO:0042744 hydrogen peroxide catabolic process RCA Interproscan
BP GO:0046686 response to cadmium ion RCA Interproscan
BP GO:0048444 floral organ morphogenesis RCA Interproscan
BP GO:2000033 regulation of seed dormancy process IGI Interproscan
BP GO:2000377 regulation of reactive oxygen species metabolic process IGI Interproscan
Type GO Term Name Evidence Source
MF GO:0000822 inositol hexakisphosphate binding IEP Neighborhood
BP GO:0002237 response to molecule of bacterial origin IEP Neighborhood
BP GO:0003032 detection of oxygen IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003730 mRNA 3'-UTR binding IEP Neighborhood
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0004888 transmembrane signaling receptor activity IEP Neighborhood
MF GO:0005034 osmosensor activity IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006808 regulation of nitrogen utilization IEP Neighborhood
BP GO:0007166 cell surface receptor signaling pathway IEP Neighborhood
BP GO:0007167 enzyme linked receptor protein signaling pathway IEP Neighborhood
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP Neighborhood
BP GO:0007172 signal complex assembly IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009593 detection of chemical stimulus IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009607 response to biotic stimulus IEP Neighborhood
BP GO:0009734 auxin-activated signaling pathway IEP Neighborhood
MF GO:0009884 cytokinin receptor activity IEP Neighborhood
BP GO:0009932 cell tip growth IEP Neighborhood
BP GO:0009934 regulation of meristem structural organization IEP Neighborhood
MF GO:0010011 auxin binding IEP Neighborhood
BP GO:0010103 stomatal complex morphogenesis IEP Neighborhood
BP GO:0010152 pollen maturation IEP Neighborhood
BP GO:0010232 vascular transport IEP Neighborhood
BP GO:0010233 phloem transport IEP Neighborhood
BP GO:0010271 regulation of chlorophyll catabolic process IEP Neighborhood
BP GO:0010311 lateral root formation IEP Neighborhood
BP GO:0010492 maintenance of shoot apical meristem identity IEP Neighborhood
BP GO:0010959 regulation of metal ion transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
CC GO:0019005 SCF ubiquitin ligase complex IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019900 kinase binding IEP Neighborhood
MF GO:0019901 protein kinase binding IEP Neighborhood
BP GO:0021700 developmental maturation IEP Neighborhood
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Neighborhood
BP GO:0031329 regulation of cellular catabolic process IEP Neighborhood
BP GO:0031537 regulation of anthocyanin metabolic process IEP Neighborhood
MF GO:0033612 receptor serine/threonine kinase binding IEP Neighborhood
BP GO:0034756 regulation of iron ion transport IEP Neighborhood
BP GO:0034757 negative regulation of iron ion transport IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
MF GO:0042562 hormone binding IEP Neighborhood
BP GO:0042752 regulation of circadian rhythm IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043178 alcohol binding IEP Neighborhood
BP GO:0043207 response to external biotic stimulus IEP Neighborhood
BP GO:0043271 negative regulation of ion transport IEP Neighborhood
MF GO:0043424 protein histidine kinase binding IEP Neighborhood
MF GO:0043621 protein self-association IEP Neighborhood
BP GO:0048437 floral organ development IEP Neighborhood
BP GO:0048443 stamen development IEP Neighborhood
BP GO:0048509 regulation of meristem development IEP Neighborhood
BP GO:0048638 regulation of developmental growth IEP Neighborhood
BP GO:0048768 root hair cell tip growth IEP Neighborhood
BP GO:0048827 phyllome development IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0051051 negative regulation of transport IEP Neighborhood
BP GO:0070417 cellular response to cold IEP Neighborhood
BP GO:0070483 detection of hypoxia IEP Neighborhood
BP GO:0070887 cellular response to chemical stimulus IEP Neighborhood
BP GO:0071215 cellular response to abscisic acid stimulus IEP Neighborhood
BP GO:0071229 cellular response to acid chemical IEP Neighborhood
BP GO:0071241 cellular response to inorganic substance IEP Neighborhood
BP GO:0071249 cellular response to nitrate IEP Neighborhood
BP GO:0071396 cellular response to lipid IEP Neighborhood
BP GO:0080022 primary root development IEP Neighborhood
BP GO:0080117 secondary growth IEP Neighborhood
BP GO:0080190 lateral growth IEP Neighborhood
BP GO:0090056 regulation of chlorophyll metabolic process IEP Neighborhood
BP GO:0090626 plant epidermis morphogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097306 cellular response to alcohol IEP Neighborhood
BP GO:0099402 plant organ development IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP Neighborhood
BP GO:1901404 regulation of tetrapyrrole catabolic process IEP Neighborhood
BP GO:1901699 cellular response to nitrogen compound IEP Neighborhood
BP GO:1901701 cellular response to oxygen-containing compound IEP Neighborhood
BP GO:1902170 cellular response to reactive nitrogen species IEP Neighborhood
InterPro domains Description Start Stop
IPR005202 TF_GRAS 221 581
IPR021914 TF_DELLA_N 44 111
No external refs found!