1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00020904.69

Cpa|evm.model.tig00020904.69


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).SNU114/U5-116kDa snRNP component


Gene families : OG0004921 (Archaeplastida) Phylogenetic Tree(s): OG0004921_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020904.69
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT1G06220 CLO, GFA1, MEE5 Ribosomal protein S5/Elongation factor G/III/V family protein 0.02 Archaeplastida
AT5G25230 No alias Ribosomal protein S5/Elongation factor G/III/V family protein 0.01 Archaeplastida
Cre17.g737250 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 Archaeplastida
GSVIVT01012881001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 Archaeplastida
Gb_08962 No alias protein factor SNU114/U5-116kDa of U5 small nuclear... 0.02 Archaeplastida
LOC_Os06g40600.1 No alias protein factor SNU114/U5-116kDa of U5 small nuclear... 0.04 Archaeplastida
MA_931263g0010 No alias protein factor SNU114/U5-116kDa of U5 small nuclear... 0.03 Archaeplastida
Mp8g11140.1 No alias protein factor SNU114/U5-116kDa of U5 small nuclear... 0.01 Archaeplastida
Pp3c27_6340V3.1 No alias Ribosomal protein S5/Elongation factor G/III/V family protein 0.03 Archaeplastida
Pp3c6_29320V3.1 No alias Ribosomal protein S5/Elongation factor G/III/V family protein 0.02 Archaeplastida
Smo231460 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Solyc07g007210.3.1 No alias protein factor SNU114/U5-116kDa of U5 small nuclear... 0.06 Archaeplastida
Zm00001e037442_P001 No alias protein factor SNU114/U5-116kDa of U5 small nuclear... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000795 TF_GTP-bd_dom 156 432
IPR031950 EFTUD2_N 4 120
IPR004161 EFTu-like_2 486 553
No external refs found!