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  5. Cpa|evm.model.tig00020912.17

Cpa|evm.model.tig00020912.17


Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-D3 component


Gene families : OG0001157 (Archaeplastida) Phylogenetic Tree(s): OG0001157_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020912.17
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Cre06.g251300 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 Archaeplastida
Cre10.g455300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
GSVIVT01019262001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 Archaeplastida
GSVIVT01027986001 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 Archaeplastida
Gb_34302 No alias component LSm4 of U6-associated LSm accessory... 0.01 Archaeplastida
LOC_Os02g01250.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
LOC_Os03g13760.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.04 Archaeplastida
MA_9431878g0010 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.02 Archaeplastida
Mp1g11210.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.02 Archaeplastida
Pp3c18_21750V3.1 No alias Small nuclear ribonucleoprotein family protein 0.03 Archaeplastida
Pp3c1_35400V3.1 No alias Small nuclear ribonucleoprotein family protein 0.02 Archaeplastida
Smo112116 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
Solyc02g062240.3.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.02 Archaeplastida
Solyc02g084020.3.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.01 Archaeplastida
Solyc03g033600.3.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.01 Archaeplastida
Zm00001e001000_P001 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
Zm00001e013395_P002 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.01 Archaeplastida
Zm00001e017261_P001 No alias component LSm4 of U6-associated LSm accessory... 0.05 Archaeplastida
Zm00001e038613_P001 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 72
No external refs found!