Cpa|evm.model.tig00020943.85

Description : DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. indica

Gene families : OG0007355 (Archaeplastida) Phylogenetic Tree(s): OG0007355_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020943.85
Cluster	HCCA: Cluster_55

Target	Alias	Description	ECC score	Gene Family Method
AT3G16840	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.06	Archaeplastida
Cre01.g022350	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana	0.14	Archaeplastida
GSVIVT01027957001	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.07	Archaeplastida
Gb_06963	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.03	Archaeplastida
LOC_Os04g43140.1	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.09	Archaeplastida
MA_10436248g0010	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.02	Archaeplastida
Mp5g03860.1	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.09	Archaeplastida
Pp3c17_22010V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.04	Archaeplastida
Solyc09g090740.4.1	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.06	Archaeplastida
Zm00001e007582_P001	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.16	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	634	740
IPR011545	DEAD/DEAH_box_helicase_dom	199	383

External Links

No external refs found!