Coexpression cluster: Cluster_55 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 4.78% (12/251) 2.34 5e-06 0.000455
GO:1901360 organic cyclic compound metabolic process 8.76% (22/251) 1.59 5e-06 0.000524
GO:0034641 cellular nitrogen compound metabolic process 9.16% (23/251) 1.5 9e-06 0.000607
GO:0043227 membrane-bounded organelle 3.19% (8/251) 3.1 5e-06 0.000639
GO:0043231 intracellular membrane-bounded organelle 3.19% (8/251) 3.1 5e-06 0.000639
GO:0006396 RNA processing 3.19% (8/251) 2.92 1.1e-05 0.000683
GO:0006725 cellular aromatic compound metabolic process 8.37% (21/251) 1.54 1.3e-05 0.000706
GO:0034470 ncRNA processing 2.39% (6/251) 3.48 1.6e-05 0.00075
GO:0043226 organelle 3.98% (10/251) 2.34 3.3e-05 0.001264
GO:0043229 intracellular organelle 3.98% (10/251) 2.35 3e-05 0.001274
GO:0016072 rRNA metabolic process 1.59% (4/251) 4.3 4.4e-05 0.001444
GO:0006364 rRNA processing 1.59% (4/251) 4.3 4.4e-05 0.001444
GO:0046483 heterocycle metabolic process 8.76% (22/251) 1.61 4e-06 0.00157
GO:0006139 nucleobase-containing compound metabolic process 7.57% (19/251) 1.5 5.2e-05 0.001571
GO:0005634 nucleus 2.39% (6/251) 3.1 7.3e-05 0.002052
GO:0030688 preribosome, small subunit precursor 0.8% (2/251) 6.62 0.000103 0.002719
GO:0044424 intracellular part 6.37% (16/251) 1.56 0.000125 0.003117
GO:0042254 ribosome biogenesis 1.2% (3/251) 4.75 0.000161 0.003244
GO:0022613 ribonucleoprotein complex biogenesis 1.2% (3/251) 4.75 0.000161 0.003244
GO:0018130 heterocycle biosynthetic process 4.38% (11/251) 1.96 0.000139 0.003274
GO:0003676 nucleic acid binding 7.17% (18/251) 1.42 0.000158 0.003513
GO:1901362 organic cyclic compound biosynthetic process 4.38% (11/251) 1.91 0.000195 0.003753
GO:0044085 cellular component biogenesis 1.2% (3/251) 4.62 0.000213 0.003919
GO:0044464 cell part 6.37% (16/251) 1.45 0.000299 0.005271
GO:0034660 ncRNA metabolic process 2.39% (6/251) 2.64 0.000424 0.007168
GO:0019438 aromatic compound biosynthetic process 3.98% (10/251) 1.83 0.000573 0.009322
GO:0090304 nucleic acid metabolic process 5.18% (13/251) 1.47 0.000937 0.014682
GO:0042559 pteridine-containing compound biosynthetic process 0.8% (2/251) 5.3 0.001008 0.015225
GO:0009108 coenzyme biosynthetic process 1.59% (4/251) 3.1 0.001215 0.017721
GO:0044271 cellular nitrogen compound biosynthetic process 4.38% (11/251) 1.58 0.001297 0.018284
GO:0042558 pteridine-containing compound metabolic process 0.8% (2/251) 5.04 0.001502 0.02049
GO:0006732 coenzyme metabolic process 1.59% (4/251) 2.98 0.001661 0.021292
GO:0071840 cellular component organization or biogenesis 2.39% (6/251) 2.26 0.001637 0.021642
GO:1901566 organonitrogen compound biosynthetic process 3.19% (8/251) 1.86 0.001763 0.021939
GO:0044237 cellular metabolic process 10.76% (27/251) 0.87 0.001834 0.02216
GO:0003723 RNA binding 2.39% (6/251) 2.19 0.002084 0.024489
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.2% (3/251) 3.45 0.002532 0.028184
GO:0140098 catalytic activity, acting on RNA 2.39% (6/251) 2.14 0.002522 0.028837
GO:0005783 endoplasmic reticulum 0.8% (2/251) 4.62 0.002766 0.029246
GO:0030684 preribosome 0.8% (2/251) 4.62 0.002766 0.029246
GO:0009987 cellular process 13.15% (33/251) 0.71 0.003612 0.035535
GO:1901363 heterocyclic compound binding 11.16% (28/251) 0.78 0.003579 0.036047
GO:0097159 organic cyclic compound binding 11.16% (28/251) 0.78 0.003579 0.036047
GO:0051188 cofactor biosynthetic process 1.59% (4/251) 2.64 0.003877 0.037273
GO:0003674 molecular_function 28.29% (71/251) 0.42 0.004105 0.038585
GO:0006807 nitrogen compound metabolic process 10.36% (26/251) 0.79 0.00456 0.041044
GO:0009058 biosynthetic process 5.18% (13/251) 1.21 0.004539 0.041743
GO:0044249 cellular biosynthetic process 4.78% (12/251) 1.24 0.005364 0.047271
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_183 0.032 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_10 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_18 0.027 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_23 0.025 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_32 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_33 0.025 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_37 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_41 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_43 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_57 0.031 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_67 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_74 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_84 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_89 0.032 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_90 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_97 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_108 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_115 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_134 0.029 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_137 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_154 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_174 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_177 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_180 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_215 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.035 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.034 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_141 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_166 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_174 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.03 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.032 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.024 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_22 0.038 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.043 Archaeplastida Compare
Sequences (251) (download table)

InterPro Domains

GO Terms

Family Terms